Pocillopora damicornis (lace coral): 113672454
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Entry
113672454 CDS
T05773
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K19719
collagen type II alpha
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113672454
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pdam00536
]
113672454
Glycosaminoglycan binding proteins [BR:
pdam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113672454
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113672454
NCBI-ProteinID:
XP_027044538
LinkDB
All DBs
Position
Unknown
AA seq
768 aa
AA seq
DB search
MKTQLVWCFAVIFVGSVTAKSIHSVARRCGCTSAVCPPPDAPCPPPPAPPAPVPPGPPGP
PGLPGSNGCQGPPGMAGCPGLKGPPGSGGPLGPPGPIGLPGKPALPGPPGPPGCMGLPGL
PGCAGMKGPAGPVGPPGPVGPAGPPALPGPPGLPGKIGCAGAPGCPGFKGEPGAMGPIGP
PGAPGKPALPGPPGQPGSMGPPGLPGCSGMKGCNGSPGAPGFVGPAGPPGPPGSPGPPGP
PAEPPCAPCGGGCCGKMNSKIIFLFVLAFVCYAHARSTKGTKRCCPCCPPPPPPPPPVQQ
VAGPQGPPGQSGCSGPPGAPGCPGWKGCPGPVGLPGPPGAPGPLGPIGPMGPKGCAGSPG
LPGCPGLKGCPGCAGPPGPPGAPGPQGVPGAAAPVPCPPPPPTPCCPAPACCKTDRTTKG
AILAETFGTLLFLGSTNDCFLFPLIGRSNKMDFKIIVLVVLISVVYVSEGKPYEEFLNKV
LRSNPLPCSRSCCEKCCTNVCRRDCIFSCCAARPLGPYPPPPAPPPPYPAPTPQLIPGPP
GFAGICGLPGPHGPRGCPGCVGPPGPPGPPGPPGRSKRAAFPCGAGCLPQCAPNCLADCC
GSPPPAPPDPPLPAVSDMMKPQPAPIVGPQGHPGSQGSPGVMGPVGPPGIGGAPGPPGPP
GPPGPPAPPAPPAPACCAVPPPGKLNMNIRILLLIAIGLVLCAADPIKTKRDAQYNYMYP
GSEGSQGPQGPIGNAGRRGPTGDPGPPGPPGPPGPPGPPAPPGPAGRR
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactcagctggtatggtgtttcgcagtcatcttcgttggctccgtgaccgccaag
tcaattcatagtgtcgccaggcgatgtggttgcacatctgctgtttgtccacccccagat
gcaccttgtcctcctccacctgcccctccagcaccagtaccacctggccctccagggcct
cccggactaccaggctctaacggatgtcaaggtcctccagggatggccggttgtcctggg
cttaaagggccaccaggcagtggagggccactcgggccaccggggcctattggacttccc
ggtaaacccgctcttcccggtccacccgggccacctggctgcatgggattacctggcctc
cctggatgtgcgggaatgaaaggaccagcaggaccagttgggccgccaggcccggtagga
ccagcaggaccacctgccctcccaggccctcctggactacctggaaaaataggctgtgct
ggtgctcccggatgccccggtttcaaaggcgagcccggagcgatgggaccaataggacct
ccaggagctccaggaaaacccgctcttcctggccctcctggccaacccggaagtatggga
ccgccaggtctccccggttgcagcggcatgaaaggatgcaacggcagtcccggagcccca
ggatttgttggccctgctggtcctccaggacccccaggatctccgggtccaccaggacca
cctgctgagccaccgtgcgccccttgcggtggtggctgctgcggtaagatgaattccaag
ataatatttttatttgttcttgccttcgtctgctacgcacatgctaggtcgacaaaaggc
accaaacgttgttgtccctgttgtccacctcctccaccaccaccaccaccagttcaacag
gtcgctggaccacagggaccacccggacaatctggatgttctggtcccccaggagctccc
ggatgcccaggatggaaaggatgcccaggaccagtcggtctcccaggacctcctggtgcc
cctggacctctcggaccaataggaccaatgggacctaaaggatgcgctggaagcccaggc
ctccccggttgccccggactcaaaggatgcccaggatgtgccggtccaccaggacctcca
ggagctcctggacctcagggagttcccggagccgctgccccagtcccatgcccacctcca
ccacctactccatgctgccctgctcccgcatgctgcaaaacagacagaaccacaaaaggt
gcaatcctggccgaaacgttcggaacactgctattccttggtagtactaatgattgtttc
ctatttcctttaataggtcgctcaaacaaaatggactttaaaattatagttttggtggtg
ctgatatctgtggtttatgtctccgaagggaaaccatatgaagaattcctcaacaaggtc
ttaagaagtaatccactgccttgttctcggtcctgttgtgaaaagtgttgcacaaacgtt
tgtagaagagactgtatattttcgtgttgtgcagcccgtccactcggcccatacccacct
ccccctgcaccgcctcccccatacccagccccaacaccacagctcatccccggaccgcca
ggattcgcaggaatttgtggattgccaggacctcatggacctagaggatgccccggctgc
gttggaccaccaggaccacccggacctccgggacccccgggacgctcaaagcgtgcagcc
ttcccatgcggagctggctgtcttccgcagtgtgccccaaactgccttgcagactgctgc
ggtagtcctccaccagcaccacccgacccacctctcccagctgtgtcagacatgatgaag
cctcagccagcacctatcgttggaccacagggacatcctgggtcacagggttccccagga
gtgatgggacctgtaggacccccgggaattggcggagcccccggacctccgggaccaccc
ggaccaccaggacctcctgcaccccctgctccacctgctcctgcgtgttgtgcggtgccg
cccccagggaaactaaacatgaatatccggattctgctgttgattgccattggactggta
ctctgtgccgctgatccaatcaagaccaaaagggatgcgcaatacaattacatgtatcct
ggttccgaaggatcccaaggcccccaaggccctattggtaacgcgggaagacgaggacca
accggagatcccggaccaccaggaccacccggacctcctggaccacccggaccacccgct
ccaccaggccccgccggaagaagataa
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