Pocillopora damicornis (lace coral): 113675580
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Entry
113675580 CDS
T05773
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
pdam
Pocillopora damicornis (lace coral)
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdam03019
]
113675580
Enzymes [BR:
pdam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113675580
Messenger RNA biogenesis [BR:
pdam03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
113675580
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
113675580
NCBI-ProteinID:
XP_027047973
LinkDB
All DBs
Position
Unknown
AA seq
1852 aa
AA seq
DB search
MAEGSEDYDSTSDQDSDDPVFDSSDGESGSDDVTEDSSEDDDVENLSDSDDEEEKFQLED
IDEEQSDEDEEGQSAKEPVQLNEGGRPEELPGIGVDKNEKPHKFPPNFSNVMRLVRKTFY
GRGVNTKFVNILTDFSDAKIFLIDGDSLLLEILGEESLDWSNGGQFLHLAYLTERFLQTF
TEKGGVFHVVFFKDMEIIWRGNPSMLLAREALILHLQHNTDFTVKTLMVNLWGQRWKDYV
DDEVPAFFLLTDAENIPCQDGKLKKTMEFFFRCLLYHCLAHGLNCVFISGIQTTATKVMG
FYMDSSAIHKKFFTKHEQRLRRTWQYLMNFRHDQESKSSPRWKDAFPLDDQIDIEAEVYK
ALQLPPKGGCRQVAAVLGCALILFKALKDSRSTKETMKTVEDRMKLFLLHIAVLNKLPLK
YRAHFIDENLLNEFCRTKDGNVYPFNEIHMCLWEILKAVQVVQEYASRNQTGNDFFKSVA
DLMDGRLVHTLFSDALQQRSKGVEGLSLPEDVIREVEDAWKKAVNIVNESCGTHSLEAQF
FPFAEDVLDFHEGEVSVMRSDADSTMKLRRLTEVQSVLVNDYAGDIRSEINAMAEETSDD
DIPNIGREFDERYHWHSLRPLSDDYDRTKKSITDNPPDNPWQRKRYFQDKQKYIRFQRFY
GNSLVGGIDQQKIITVTESGSKKKTGKRKENKQSKNAAKIIEESLKKSRGKLYKAELKDQ
EKWDGIVRDIETNLRRDNFSDVLKLIDKYLLDCKSPKLRLHALMKKVYSCFEGWKQTRSS
DPESNDMKYPVILMESVHKIVQDLPSVLTDRNKKKLAKIMQKLGFDDLVPLFCEMPPDRE
KKNEQHFVHTTSTRFQLEYMGHLLKREVRTDPDSRVEHFIPDTWQRQLLDAVDNNESAVI
VAPTSSGKTYASYYCMEKILRKDNDSVVVYVAPTKALVNQVVATIYARFEKQMPEGRSVF
GVFTRDYRHNTLNSQILVTVPQCLEILFISPHRQHWTKNVKYVIFDEVHCIGSETGAEVW
EHLLLMIRCPFLALSATIGNPEELRRWLQAAQDFREKQDKENKENLRKSYRIRLVKFEGR
YSDLEKSIYLPNNCEKGYDDYNNEAFVRLHPCGQLGHQQLRQKGLPGDMALTPKESLQLY
DTMVSVWPDCESLQNLSPETYFLENKLIQKGHARQYESDLKREFKSWADSRELTKVQSVI
NSLKSVFLENHSLTEEQWGELGMTFSGKQFIKNNFAKLIDELRAQDKLPALVFSNDRKLC
EELAIGYAQKLESKEQIIRRKGNTKEAKLAQKRQGKAEKSLHRKRDEMQKEKEKRSKSQP
DKQDERGSLSALNEVLPQCTLALNTGIGKEDYDEIMKRIRFISEKSLFKRALKRGIGFHH
SGCSANKRSVVEMLFRGKYLQVVNATSTLALGIHMPCKSVVFAGDSSYLNSLQYRQMSGR
AGRRGFDPMGNVIFFGIPYHKVQRLMTANIPKLVGNFPITVSLVLRLLLMTTQADDKKDA
LTKALALLSHPFICQKYPQLEIQIKLHFLFSVELLVRLSLINKETGAPQEMAGLATHLHY
HEPSNFVLISFLRSGLFHKLCQPRTKGKFSVDIMRKMVLVLSHLFGRTYVHPSLMLRDRS
SSKLILEDLPDEFAKVVESYNRKVTDIFSQYPATVAKWLGEGRGENHKLPLSGIEFPNKA
SIDGIVEHDMIKVLANTSIKPLACSYFAALSGNTDSQLHHTSQIPGDRSEDEVDSDEEEW
EEEPLRDMQKIVRQDIYTDMNLVPILRLRNRLPLNAYALDFFKHGSAKVIEKENGMLAGD
VYNAIKEFYLTIKSISCSLEELGPKTDNVVLAFKQLAQEYGEKFRDQFEHEA
NT seq
5559 nt
NT seq
+upstream
nt +downstream
nt
atggcggagggaagcgaagattacgattcaacatctgatcaggactctgatgaccctgtg
tttgactcaagtgatggtgaaagtggtagcgacgatgtcactgaggactcaagtgaagat
gacgatgttgagaacctttctgacagtgacgacgaagaagaaaaatttcaactggaagat
atagacgaagagcaaagtgacgaggatgaggaaggacaatctgctaaagagccagtgcag
ctgaatgaaggtggaagaccagaagagctacctgggataggcgttgacaagaatgaaaaa
cctcataaatttccgcctaacttctccaacgtcatgcgtttggtcagaaagactttttat
ggccgaggagtgaataccaagtttgtcaacatcctgaccgacttttcagacgcaaagatt
ttcctcattgatggcgactccttgctgctagaaattcttggtgaggaaagcttggattgg
agtaacggtggacaatttctgcatcttgcatacttaacggagcgatttttgcaaacgttt
acagagaaaggcggcgttttccacgtcgtttttttcaaagacatggagataatctggaga
ggtaatccgtccatgctgctcgctcgggaagcgcttattcttcatctccagcacaacaca
gattttaccgtaaaaaccttaatggtgaatctttggggacagaggtggaaagattacgtt
gatgacgaggtccctgcgtttttcctgttgacggatgctgaaaacattccttgccaggat
ggaaagctgaaaaaaacaatggaattttttttccgttgtctcttgtatcattgtctcgca
catggattaaattgtgttttcatttcgggcatccagacaactgcgacaaaagtgatggga
ttttacatggattcctctgccattcacaaaaagttctttacgaagcatgaacagcgacta
cggagaacgtggcaatatctgatgaatttcaggcacgaccaggaatctaagagctcaccc
agatggaaggacgcgtttcctctggatgatcagattgacatagaagcagaagtttacaaa
gctcttcagcttccaccaaaaggcggctgtcgacaggttgccgcagtccttgggtgtgca
ctgatcctctttaaagctctcaaggactctagaagcaccaaggaaacgatgaaaactgta
gaggacagaatgaagctttttttgcttcacattgcagtactgaacaaactgccgttgaag
tatagagctcacttcatagacgaaaacttgttaaatgaattctgcagaacaaaggacggt
aacgtctatccctttaacgagatccacatgtgtttatgggagattttaaaggcagtgcaa
gttgtgcaggaatatgcaagtagaaaccaaacaggcaatgacttttttaagtcagtggca
gatttaatggatgggcgtctggtccatactctcttttccgatgccttgcagcaaaggtca
aaaggcgttgaaggactcagtctaccggaggatgtcatcagggaagtagaagatgcgtgg
aaaaaggctgtaaatattgtgaacgagtcatgtggtactcactcccttgaagcccaattt
tttccctttgctgaagatgtgttagactttcatgaaggagaagtttcagtgatgcgttca
gatgcagactctaccatgaagctcaggcgacttactgaggtgcaaagcgttcttgtgaat
gattatgctggggatattcgatcagaaattaatgccatggcagaagaaacaagtgacgac
gatatacctaatattggtcgggaatttgatgaacgataccactggcattctcttagacca
ctttctgatgattacgatagaacgaagaaatctattacagataatcctccagacaatcct
tggcaaaggaaacggtattttcaagataagcaaaaatatattcgctttcaaagattctac
ggtaactcactggttggtggcattgatcaacaaaaaatcatcactgtcacagagtcaggg
tcgaaaaagaaaacgggaaagagaaaggaaaataagcagagcaaaaacgctgcaaaaatc
atcgaggaaagtcttaaaaaaagcagaggtaagttgtataaagcggaattgaaagatcaa
gagaagtgggatggcattgtgagggacatcgaaacaaatctgaggagagataacttcagc
gatgttctgaaattgattgataaatatctactagattgcaaatctccaaaacttcgtctt
cacgcgctcatgaaaaaagtctatagttgctttgaaggctggaagcagacaagatcctcc
gatccagaatctaatgacatgaaatatcctgtcattttgatggaaagcgttcataaaatt
gttcaagacctaccaagtgttcttaccgataggaacaagaagaaactggctaaaattatg
caaaagctgggatttgacgacctcgtgcccttgttttgtgaaatgccaccagatcgtgag
aaaaagaatgaacagcattttgttcacaccacaagtacaagattccaacttgaatacatg
gggcatttgctgaaacgggaagtgagaactgatccggactctcgggttgaacattttatt
ccggatacatggcagcgccaacttctcgatgccgtcgataacaatgaatcagcagtgata
gtggcaccaacctcttcaggaaagacttacgcctcgtactactgcatggagaaaattctt
aggaaggataatgatagtgtagtggtctacgttgcaccaacaaaggctttggtcaatcaa
gtcgttgctacaatttatgcacggtttgaaaaacagatgccagagggaagatcagtgttc
ggtgttttcacgagagactatcgtcacaacacgctaaattctcagattcttgttacagtc
ccacagtgtttggagatcctctttatttctccacacagacagcattggacgaagaatgtc
aaatatgtgatttttgatgaggttcactgtattggatcagaaactggagctgaagtctgg
gagcatctcctacttatgattcgctgtcccttcctggcgctctccgcaaccattggaaac
ccagaggaactaagacgctggttgcaagctgctcaagactttcgtgaaaagcaagacaaa
gaaaataaagaaaatctgaggaagtcatatcgcatcaggttagtcaaatttgaaggacgg
tactccgatctagaaaagagcatttaccttccaaataattgtgagaaaggatacgatgat
tacaacaacgaggcattcgtgaggcttcatccttgcggccagctaggacaccaacagctt
cgccaaaaaggtttaccaggtgatatggcacttacaccaaaagaatctctacaattatat
gacactatggttagcgtgtggcctgactgtgaatcactccagaatctttctcctgagaca
tatttcctagaaaataaattgatccaaaagggtcatgctcggcaatacgagagtgacctg
aagagggaattcaagtcttgggcagacagcagagaattgacaaaggttcagtcagttata
aattctttaaagtcagttttcttggaaaatcactctttaactgaagaacaatggggtgaa
ctgggaatgactttttctggtaaacagttcataaagaacaattttgcaaaactcattgac
gagctcagagcccaggacaaactgcctgccttagtgtttagcaatgatcgtaaactctgc
gaagagctggcaatcggttatgctcagaaactagaaagcaaggaacaaattatcaggaga
aaaggcaacacaaaagaggcaaaacttgcacagaagaggcaaggaaaagctgaaaaaagt
ttgcacagaaaaagagatgaaatgcagaaagaaaaagagaaaagatcaaaaagccaacca
gataagcaagatgagaggggttctctttcagccttgaacgaggttctaccgcagtgcaca
ttggcattaaatactgggattggaaaagaggattacgacgagataatgaagagaatcagg
ttcatctctgaaaaatcgttattcaagcgggctctaaaacgaggaatcggctttcatcat
agtggatgtagcgctaataaacgctctgtggtggaaatgttattcagaggcaaatacctt
caggtggtcaatgcaacgtccacgttggctctcggcatccatatgccttgtaagtcagtg
gtgtttgccggagactcgtcctacttaaattcgctgcagtaccgacagatgtctggtagg
gcgggtcggagaggttttgaccccatgggaaatgtcattttctttggaattccttaccat
aaagtccagcgcctcatgactgcaaatatcccaaagcttgttggcaacttccccatcact
gtttcactggttctgcggctgcttctgatgacgacccaagcagatgacaagaaagacgcc
ctcactaaggccctagcattactgtctcatccttttatctgccaaaaataccctcaactg
gaaatccagatcaagttacatttcctcttcagcgttgaacttctggttagattgtctctt
ataaacaaagaaaccggagctccacaggaaatggccggactggcaacccatcttcattac
catgaaccgtccaactttgtcctaatcagctttctacgaagtggtctcttccacaagctt
tgtcagccaaggacaaagggtaaattttctgtcgacattatgcgaaaaatggtacttgtt
ctcagccacttatttggaaggacttatgttcacccctctttgatgcttagggatcgatct
tcatcaaaattgattttggaggatctcccggatgaatttgccaaagtagtcgaaagctac
aatcgtaaggtcaccgatatctttagtcagtaccctgccacagtggctaagtggttggga
gagggaagaggagagaatcacaagctccccttatcaggaatagaatttccaaataaagcc
agcatcgatggcattgtcgagcacgatatgataaaagtccttgcaaacacttccatcaag
cctttggcttgttcctacttcgctgcgctgtcagggaatacagactcacagttacatcat
accagccaaataccaggcgatcggagtgaagatgaagttgatagcgacgaggaagagtgg
gaggaggagccactaagagatatgcagaagatcgttcgtcaagatatctacacggacatg
aatctcgttcccattcttcgactcaggaataggctacccctgaatgcctatgcattggat
ttttttaagcacggatccgctaaagttattgagaaagaaaatggcatgctggctggcgat
gtttacaatgccataaaggagttttaccttaccattaagtcaatcagttgttcactggaa
gagctgggtcctaaaactgacaatgtggtactggcttttaaacagctggctcaggagtac
ggagagaaattcagagaccagtttgaacatgaggcatag
DBGET
integrated database retrieval system
