Pocillopora damicornis (lace coral): 113676307
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Entry
113676307 CDS
T05773
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03020
RNA polymerase
pdam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113676307
09124 Replication and repair
03420 Nucleotide excision repair
113676307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdam03021
]
113676307
03400 DNA repair and recombination proteins [BR:
pdam03400
]
113676307
Enzymes [BR:
pdam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113676307
Transcription machinery [BR:
pdam03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113676307
DNA repair and recombination proteins [BR:
pdam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113676307
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
113676307
NCBI-ProteinID:
XP_027048758
LinkDB
All DBs
Position
Unknown
AA seq
1889 aa
AA seq
DB search
MAFASGSPAPLRDVKLVQFGVLSPDEIKQMSVTTEGGVKYSETMEGGKPKLGGLMDPRQG
TIDRFSRCQTCAGNMTECPGHFGHIELAKPVFHVGFYKMIIKCLRCVCFYCSKLLVDGNN
PKVKEIVSKSRDQPSKRLQHIYDLCKGKKICEGGDVVDDKQQSVDLDEAEKKMSHGGCGR
NQPQIRRSGLDLTAEWKEVNEDSQEKKIPLTAERVHEIFKRISDEECEILGMNPKFARPD
WLIVTVLPVPPLAVRPSIVMSGSARSQDDLTHKLSDVVKANGNLRRNELNGAAAHIIAED
TKMLQYHVATLIDNEIPGLPRAMQKSGRPLKSVKQRLKSKEGRIRGNLMGKRVDFSARAV
ITPDPNLSIDQVGVPRTIAQNLSFPEIVTPFNIDSMQELVRRGNNQYPGAKYIIRDNGER
IDLRFHPKPSDLHLQFGYKVERHIRDDDVIIFNRQPTLHKMSMMGHRVKILPWSTFRLNL
SVTTPYNADFDGDEMNLHVPQSLEARAEITEIMMVPRNIVTPQSNKPVMGIVQDSLMAVR
RFTKRDVFLEKDAMMNLMMWIPDWDGKLIQPAILKPQPLWTGKQIFSMIIPGNVNMIRTH
STHPDDEDSGPYKHISPGDTKVLIEHGELISGILCKKSLGTSSGSLVHIVAVELGHEVAR
MFYGNIQTVVNNWTLIEGHSIGIGDCIADNETYDEIQRLTKKAKAEVIEVIEKAHNDDLE
PTPGNTLRQTFENQVNRILNDCRDKTGGSAQKSLSEYNNFKAMVVSGSKGSKINISQVIA
VVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREG
LIDTAVKTSETGYIQRRLIKAMEGLMVAYDGTIRNSNNQMIQLRYGEDGMDGAAIEFQNM
PTIKPTNSAFEKKFHFDCSNERRLRRLLQEDVVRDLCSSNTALQDLESEFNQLQEDREIL
RRIIPSGNSKVALPVNLGRLIWNAQKTFHLTNRNPSDLHPLRVVEGVRELSKKLIIVHGE
DHISKQAQFNATLLFNILLRSTLCTKRVAEEFHLSSEAFEWLLGEIETRFNLSMVKPGEM
VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLTGQ
PARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVVTEDQDFVNVYYEMPDFDVTR
ISPWLLRIELDRKRMTDKKLTMEQISEKINLGFGDDLNCIFNDDNAEKLVLRIRIMNNDD
GKFQDEEEQLDKMDDDVFLRCIEANMLTDMTLQGIETISKVYMNLPHEDNKKRVTITEEG
EFKHISEWILETDGVALMRVLSEKDVDPVRTTSNDICEIFSVLGVEAVRKAVEREMNHVI
SFDGSYVNYRHLALLCDIMTCRGHLMAITRHGINRQEVGALMRCSFEETVDVIMEAAQHA
EHDNIRGVSECLILGKLPRIGTGCFDLMLDAEKCKFGMEIPTNIMGPGMMGGPMTGTGMF
FGAAGSPTAKSPQMTPWNMGATPAYTEAWSPGLGSGMTPGAAGFSPAASEASGFSPGGYS
PAWSPQPQSPASPGPSSPYIPSPAAASPNYSPASPAFMPSSPSMSPASPSYSPTSPGYSP
SSPSTGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPTS
PSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPSSPSYSPTSPSYSPQSPSYSPSSPSYSPSSPKYSPTSPSYSPTSPKYSPTSP
TYSPSSPSYSPSSPKYSPSSLSYTPSSPTYSPTSPTYSPSSPRYSPTSPQYSPSSPQYSP
SSPKYSPSSPNYSPNSSSFTPASNPSSPS
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atggctttcgcgtctgggtcaccagctcccttacgggacgtgaaactggtgcagtttggt
gtactgagtccagatgaaataaaacaaatgtcagttacaaccgaaggcggcgtgaaatac
tccgaaacgatggagggaggaaagccgaagctaggtggtttaatggatcctcgacaggga
acaatcgaccgtttctctcgttgccaaacttgcgccggaaacatgactgaatgtcccggt
cacttcggacacatagagctggcaaaaccggtgtttcacgtcggcttctacaagatgata
atcaaatgtttgagatgcgtttgcttctattgctcaaaactccttgtcgacgggaacaat
cctaaagtgaaagaaattgtatcaaagtctcgtgatcaaccaagtaagcgtctacaacac
atctatgacttgtgcaaagggaaaaaaatctgtgaaggtggtgatgttgttgatgataaa
caacagtctgtagacttggatgaggcagagaaaaagatgagtcatggtggatgtggtaga
aaccagccacagatcagaagaagtggtcttgatcttactgcagaatggaaagaggtgaat
gaagactcacaggagaaaaagattccactcacagcagagcgtgtgcatgaaatatttaaa
agaatttctgatgaggaatgcgagattctgggaatgaaccccaagtttgcacgtcctgat
tggttgattgtgaccgttcttccagttccacctttggctgtaagaccttccattgttatg
agtggttctgctcgtagtcaggatgacttaacccacaagctgtcagatgttgtgaaggca
aatggtaatcttcggagaaatgaacttaatggtgctgcagcgcacatcattgcagaagac
actaaaatgctccagtatcatgtggcaacacttatagacaatgaaatccctggtctgcct
agggccatgcaaaagtctggacgtccattgaaatcagtgaaacagagactgaagagtaaa
gaaggccgtatcagaggaaatttgatgggaaaaagagttgacttttcagctcgtgctgtc
attactccagacccaaacttgtccattgatcaggttggcgttccacgtaccattgctcag
aatcttagtttccctgagattgtcacaccattcaacattgacagcatgcaagaacttgtg
cgccgaggaaacaaccaatatccaggtgctaagtacatcatcagagacaatggagagcgt
attgatctcaggttccaccccaaaccaagtgatctccatcttcagtttggttacaaggtg
gaaagacacatcagagatgatgatgtgatcattttcaatcgacaacccactcttcacaaa
atgtctatgatgggacacagagttaaaatcctgccttggtcaacattcagacttaatctc
agtgttaccacaccatataatgctgactttgatggtgatgagatgaacttacatgtacct
cagtccctcgaggcacgtgctgaaatcactgagatcatgatggtgccaaggaacattgtt
acaccacaatccaataaacctgtcatgggaatagtgcaggattctttgatggctgtcaga
agattcaccaaaagagatgtttttctggaaaaggatgccatgatgaacctcatgatgtgg
atccctgattgggatggtaagctgatacagcctgccattctcaagcctcagccattatgg
acagggaaacagatcttcagtatgattattccaggaaatgtcaatatgatccgtacacac
agtacccacccagatgatgaagatagtggaccatataaacatatttcacctggagacact
aaggttctcattgagcatggtgagcttatctctggcatcttatgcaaaaaatcccttgga
acttcgtcaggaagtttggtccatattgtggcagtagaattggggcatgaggtggcgcgc
atgttttatgggaacatccagactgttgtgaacaactggactttgattgaaggacacagt
attggtattggtgattgcattgctgataatgaaacttatgatgaaattcagcgattgaca
aagaaagccaaggcggaggtgattgaggtgattgagaaagctcacaatgatgatcttgag
cccacgccaggtaacacactgcggcagacttttgagaatcaagtgaaccgtatcctcaat
gactgtcgtgacaaaactggaggaagtgctcagaagagcttgtcagaatacaacaatttc
aaggctatggtggtgtctggttccaaaggctccaagatcaacatttcacaggttattgct
gtggtgggtcagcagaacgttgaaggtaaacggattccatttggattccgccatcggaca
ctcccacacttcattaaagatgattatggtccagagagtagagggtttgtggaaaattcg
taccttgctggccttactccaacagaattctacttccatgccatgggaggccgtgaggga
ttgattgatactgctgttaaaactagtgaaactggttacattcagaggcgtttgatcaaa
gccatggaagggctaatggttgcgtatgacggaacaatcagaaactctaacaatcagatg
atccagttgaggtatggtgaggatggaatggatggtgcagcaatcgagttccagaatatg
ccaaccataaaaccaaccaattcagcttttgagaaaaagtttcactttgattgctccaat
gaaaggcgtctgcgccgtcttctacaggaagatgtagtgcgagatctttgcagcagtaac
acagctcttcaggatcttgagtcagagttcaatcaattacaagaggatcgagaaattctt
cgtagaattattccctcaggaaactccaaggtggctttaccagtaaatctcggtcgtttg
atctggaatgcacagaagacctttcatcttaccaatagaaatccgagtgatttgcaccct
ctcagagtcgttgaaggtgtgcgtgagttgtccaagaaattaataattgttcatggcgag
gatcacatcagtaaacaagcacagtttaacgccactctgttattcaacattctccttcgt
tccactctgtgtaccaagcgagtggctgaggagtttcacttgtcatcagaggcttttgag
tggttactgggagaaattgaaactcgcttcaacctgtccatggttaaacctggtgaaatg
gttggtgctttggccgctcagtctctcggtgaacctgctacgcagatgaccctcaacacg
tttcactatgccggtgtatctgccaagaacgtaacccttggtgttcctcggctcaaagaa
atcatcaacgtgtccaagaaacctaaaactccatccctgacggtgttcctcacgggacaa
cctgccagagatgctgaaaaggcaaaggacgtgttatgccgtttggagcacacaacgtta
cgtaaagtcacagccaacacagcaatttattacgacccagaccctcagaacacagtagta
acagaagaccaggactttgtgaatgtttactatgaaatgcctgactttgacgtgactcgg
atctcaccatggcttttgcgtattgaactcgatcgtaaacgtatgacggacaagaagctc
accatggaacagatctctgagaagataaatcttggttttggtgatgatctgaactgcatt
tttaacgatgacaacgcagagaaacttgtcttgcgtattaggatcatgaacaacgacgat
ggaaagttccaagacgaggaagaacagctggacaagatggatgacgatgtgttcttacgc
tgcattgaagccaacatgctgactgatatgaccctgcagggaatcgaaaccatctctaaa
gtgtacatgaacctgcctcacgaggacaacaagaagcgagtcaccatcacagaggaagga
gagtttaaacacatctctgaatggatcctggaaactgacggtgttgcgcttatgagggtg
ctcagtgaaaaagacgtggatcccgtgcgtacgacatccaatgacatctgtgaaatattt
tctgtgcttggagtcgaggctgtgcgaaaggctgttgaacgtgaaatgaaccatgttatc
tctttcgacggttcttacgtaaactaccgtcacttggccctgttgtgtgacataatgacg
tgtcgaggacatctcatggccattacaaggcacggtatcaatcgccaggaggtcggagcg
cttatgagatgttcttttgaggaaacggttgatgtaataatggaagccgcacagcatgca
gagcacgataatatacggggtgtcagcgagtgtttgattcttgggaaactcccccgcatt
ggaacaggctgctttgatctgatgttagatgctgagaagtgtaagtttggtatggagatc
cccacaaatattatgggacctgggatgatgggcggacctatgacaggcactggaatgttc
tttggtgctgcaggatctccaacagctaagtcaccgcagatgactccttggaacatggga
gccacacccgcttataccgaggcgtggagtccaggactaggcagcggcatgacaccaggg
gctgctggattctctccggcagcttcagaagctagtggctttagccctggaggttacagc
cccgcttggagtccgcagccacaatcgccggcgtcaccaggtcccagtagcccgtatatt
cctagtccagcagctgcaagtccaaactactctccagcgagtccggcatttatgcccagc
tctccttccatgtcaccggcaagtccgtcttattcgccgacgtctcctggttattccccc
agttctccatcaaccggatattcaccggcaagtcccagttactcgccaacttcaccatcc
tattctccaacttctccttcgtattctccaacatctccatcttacagtccaacatctcca
tcctattctcccacatctccttcttacagcccttcttcgccatcttactcgcctacctcg
ccatcgtattctccaagctctccttcatattctcccacttctccttcatattctccaacg
tcaccttcgtattcccccacgtcaccatcctactcaccaacctccccgtcttactccccg
acatcccccagctacagcccgacctcaccgtcgtattcgcctacctcgccgtcttactct
cccacttctccttcctattcaccttcatctccatcctactcgcctacttcccccagctac
tcccctcagtcgccctcctactctccatcttctccgtcttattctccatcttcccctaag
tattctccaacgtcccccagctactcgcctacatcgccaaagtacagcccaacatcacca
acttactcgccttcttctccttcttattctccttcgtccccaaagtattctccatcttcc
ctctcttacaccccatcttctccaacttattcccctacctctccaacttactctccgtcc
tctcctcgctattctccaacctctcctcagtactcgccctcctcgccgcagtactcacca
tcatccccgaagtacagcccaagctccccaaactattccccaaattcttcatcgtttacg
ccggcatcgaatccaagcagtccaagctaa
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integrated database retrieval system
