Pocillopora damicornis (lace coral): 113680054
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Entry
113680054 CDS
T05773
Name
(RefSeq) uncharacterized protein LOC113680054
KO
K08132
collagen type XII alpha
Organism
pdam
Pocillopora damicornis (lace coral)
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pdam00535
]
113680054
Proteoglycans [BR:
pdam00535
]
Extracellular matrix (ECM) proteoglycans
Others
113680054
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Laminin_G_3
VWA_2
VWA_CoxE
Toxin_R_bind_N
Sialidase
Trypan_PARP
WSC
Motif
Other DBs
NCBI-GeneID:
113680054
NCBI-ProteinID:
XP_027052860
LinkDB
All DBs
Position
Unknown
AA seq
3155 aa
AA seq
DB search
MYLSHVPFSYFFTGPARASAVYPLTYRTRTRDVSLFGNPAGFARNVRFAPGPDKKPYGSY
QFLGRPDSYIEFPNRGKIDTKRSITLLAWIYHQGQAGPIFNYKPNGWGVHFWMVSPRTLF
VRFTRRGRLRSTKSVMSRRVLPGRWQFVGASYNQRTGQAKLFINGRFTATTYIGRIRLAT
NYPVRMGARVGDRRYFKGRISCMQVYDRALTAKQILRRKTRCFRKGPVVIPGVPVSPIRP
AGKVCLAKIDMTFLIDGSGSIEAYGKGNFKRCLDFVKRMVVSFKISQRLTRVGVVLFSHR
PRLIFSFSTYSRARDILKAIDRIRYPRGGTKTGMAMYYAQRTLFRRKHRHRKQVMIVMTD
GRSQDRVSGAARALKKQGVVLFAVGIGKRYNINQLIHIASSRRHVFTAGFRNLPSIVRII
KTKACAGAVKPSKPGKPSRPARYVRAMALYPLSYRTKGRDIGVFSNPPGVRGLVRYATGP
DGRPNTATQFFGKPNSFIQFPNRGKLDTKRSITLLAWIYHEGSSGPIFNYMPNGWGVHLW
MTSPTTLFARFTRRQGRRFTPDIQYRGVAHRRWQYVAASYDGGSGTAKLYLNSRLVARKR
IGIFRIATNYPVRMGARVGDSRFFKGRISCMQVYSVALNSRQIAARSRRCFLKSTVTPGR
PVVPGGVPFRPGKPMCKAKVDLGFLVDASGSIEMYGRGNYQRMKDFIKEVAGSFVVSRHG
THVGLVVFASRPEPVFQFNTYYTRRGVMNAVQKIPYINGGTRTGLAIRRATRYLFKPRPQ
PGRKKVLIVMTDGISYDDVIVPARRLRRTGVSIYALGIGLKYSRRQLGKIAGTPRHVFTS
KFATLRKAARKIVSRICAEPGAKPIKPVGPKPVRPRQPVRAVAIYPLNGGVKGRDISLSK
NPTAILSNVRPAPGPDRTRDGSYQFFGKSNSYIHFPNRGKLDTRRSITLMAWIYHQGRAG
PIFNYMPNGWGVHFWMITPRTLFVRFTRRQGRRFTKAVMSRRVVPNRWQLVATTFDGRSG
QARLFIQRQFVAQEYVGRIRLATNYPVRMGARIGDSRFFFGRISCMQVYPMALTRRQILA
RKTRCFRKVIRPPPRPRPRPGPRPRPQPPIPGPAGKICRAKIDLVFVVDGSGSIEAYGRG
NFKRCLRFVKNMVRSFTISRSYVRVGIVVYSSRSRLILTFNQNRGVNNVLRTIDRIRYPR
RGTRTGAALSFAYSRLLAGARKRSSKVVICMTDGRSQDDVRGPANLMRRRGVKIFSLGIG
KRYNMRQLLQMSGNRRKVFTADFKNLGSVVRAIKQKACRVSKPTRPTKPGKPSAVGRAGA
VYPLSSSTAARDISTNGNPPGRRVYVRFTPGPDGVRGTATSFYGRANSYIEFPNRGRLDT
RRSITLIAWIRHLGRAGPIFNYMPNGWGVHFWMVNPRTLFARFTRRRGRRFTPAVSSRTV
RYRAWNYVGCTYDYRTGIARLFVGNRFVASRRIGRIRLATNYPVRMGARIGDGRYFRGSI
SCMQVYKKALTAGQILARRTRCFKRVPRPQPPRPRPRPGPRPRPPIRPYPGGKVCRARID
LAFVIDASGSVGRANFRRCLTFVKNMARVFTISRSYTRFAVVLYSSRPSKIFGFNRYLNQ
HSLLRAIGRIRYTGGGTKTGYALTYTYQRLLRYSRRKNKVVVVMTDGRSYDKVQPPALAI
RRKGIKILTLGVGKGYSMKQLIQMSSNRRDVFTADFKNLGSVVKIIKRRACKAGKPRPPR
PPRPPKPVVIKRAVAVYPLNRNTQGRDISFARNPNGRLGRVRFAKGPDNLPGGSIEFFGR
SNSYVEFPNRGKLDTGRSITLLAWIYHTGRAGPIFNYMPNGWGVHFWMVTPSTLFARFTR
RTGRRFTRAIYSRSVKPRKWQFVGATYNYRTGVARLFVNSRFVVSTRVGQIRLATNYPVR
MGARIGDRRYFKGRVSCMQVYSQALNRNQILVRQRRCFRAVRPRPRPVRPVRPTRPKVKT
QAVAIFPLNGGTKGRDISNRGNSRGILSYVRPAPGPDGTRDGSYQFYGRSNSYIQFPNRG
GLDTKNSISLLAWILHQGRAGPIFNYMPNGWGVHFWMITPRTLFVRFTRRRGRRFTSAVV
SRSVIPGRWQFVGATYNGRTGKAKLFVNNKFTARKYIGQIRLATNYPVRMGARIGDGRYF
RGRISCMQVYNGALSRWKINSKKRRCFRRKVRPGPRPRPRPRPVPLPRPKPRPRPKPGKV
CIAKLDLAFLIDGSGSVGFSNFRRCLVFIQNVIRGFRISQRYTRIAAEVYSSTPRRTFQF
TRYSNAYQVLRAVGSIKYPRGGTNTGKALWDVLRYVFRGRTNRKRVLCVLTDGRSQDHVL
KPAQALKRANVEVFSVGVGRGYSITQLNQMATDRNHVFTVDFRNLNSIIKAIKKKACKGG
QKPPSPHRPSGTLRAVAVYPLNSLTKSRDISFNRNPPGIMSNVRPAPGPDGRRGTSYEFL
GRRNSFIQFPNFGKIDTKKSITILAWVYHQGRAGPIFNYHPSAWGVHFWMVGPRALFVRF
TKRRTKDFTAALMSRTVKPSHWQYVGASYDHSTGMAKLFVGGRLVSRKRIGRIRLATNYP
ARMGVRIGDGRYFRGRISCLQVYSAPLNARQIAARAKRCFVPGLPKPRPPPRPTGQLFKR
RGCYKDRSRRAMGILLGNLRRRRDAVMRCFLLASRRGYRAFGVQDGGECFSGPQAHRTFS
KYGRSGRCKNGRGGPWANDVYIIIRKRPIPRPLPRPRPQPRPALPVCKARLDLGFIVDGS
GSVGRANFIRCLNFIKNLVSSFVISPGHSRVGLLIYSHRVIPVFSFGQRPRLRGVLRAIS
RIRYPGGGTKTGKALSYSRRYLFARSSLRKILILMTDGKSYDRVKKPAAVLRNMGVQVFA
LGVGKRYSMKQLLQIASNRRHVFTADFRNLGSFVRAIKQKACRGITKKPKKPHAMSAVAI
FPFSKTYRGRELRNRNPPGYPSHVLFTPGPDGLPYGSYYFLGRPNSYVEIPNKGTLDVRN
CITILAWIYHEGNAGPIVNYKRNGWGVHLWMVNPRTLFVRYTQRLGRRFTHALAYRGVKP
RTWQFVGTSYNRNTGVAKLYINGKMVSRRKIRKISLATNYEIRVGARQGDRRYFRGRIAC
LQFYSAALTTNMIRRRMRACFRRGKLKWKSILRSG
NT seq
9468 nt
NT seq
+upstream
nt +downstream
nt
atgtatttatctcacgtgccattttcctacttttttacaggtcccgctcgcgcctctgca
gtatacccgctgacctaccgaacacggacacgagatgtcagtttgtttggaaacccggca
ggattcgctaggaatgttcgatttgctccaggacctgataagaaaccgtacggctcatat
cagttccttggtcgaccagacagttacattgaatttccaaatcgtggcaaaatagacaca
aaacgttccatcacgcttttagcgtggatctaccaccaaggacaagcaggccccattttt
aattacaagccaaatggttggggtgttcacttttggatggtttcacctagaacgctgttt
gtccgctttacgcgccgtggacggcttcgctccaccaaatcggttatgagcaggagggtc
ttacccggtcggtggcagttcgttggtgcaagttacaaccagcgcacagggcaagcgaag
ttgttcattaatggcaggtttacagcgacgacgtacatcgggagaatcagacttgcaacg
aattatccggtcagaatgggtgcccgtgttggcgatagaagatatttcaagggacgaatc
tcgtgtatgcaagtgtatgatcgcgctctcacagcaaagcaaattttacgccgaaagacc
agatgcttcagaaaaggtcctgttgttattcctggtgttccagtcagtccaatccgtcca
gcaggaaaagtctgcctggccaagatcgacatgacgttcctcatcgatggctccggcagt
attgaggcgtatggcaaagggaatttcaaacgctgtctagatttcgtcaaaagaatggtc
gtatccttcaaaatctctcaaagacttactcgagtcggcgtggtgcttttctcccaccgt
cctcgccttatattcagcttcagcacttacagtagagctcgtgatatcttaaaagctatc
gacagaattagatatccacgaggaggcactaaaacaggcatggcaatgtactatgcccag
cggactctgtttaggcgcaagcacagacaccgtaagcaagtcatgattgtgatgacggat
ggtcgttcccaggaccgtgtgagcggagctgcacgtgcactaaaaaaacagggcgtggtg
ttatttgctgtcggtattggcaagcgatacaacattaaccaattgatccatatcgcgtct
tcaagacggcatgtcttcacagcgggatttaggaatttgccgtccattgtcaggattatt
aagacaaaggcatgcgcaggtgctgtcaaaccaagcaaaccaggaaaaccttcccgtcca
gcgcgttatgttcgtgccatggctttatatccactgtcatatcgaacaaagggaagagac
atcggcgtcttctccaatcctcccggagttcgaggtcttgtcagatatgcgaccggtcca
gacgggcgacctaacaccgcaacccagttcttcggtaagcctaacagcttcattcagttt
cccaacagaggcaagcttgacacgaaacgatctatcactctattggcttggatctaccat
gaaggaagttcgggtcctattttcaactacatgccgaatggttggggcgtccatctctgg
atgacatctcctaccactctctttgcacggttcacacgtcgtcaaggacgccgcttcact
cctgacattcaataccgcggcgtcgcgcacagaaggtggcaatacgtagctgcgagttat
gatggcgggagcggcacggctaagctgtacctgaatagcagactggttgcgcgaaagcgt
attggaatatttagaatagcaacaaattatcctgtcaggatgggtgcaagggttggtgac
agtcgcttcttcaaagggagaatctcttgtatgcaggtgtacagtgtggcgttgaactcc
agacagattgcagctcgaagcagaagatgtttcttgaaaagtactgtaacacctggtcgc
cctgtggttccaggtggagtgcccttccgtccaggcaaaccaatgtgcaaagctaaggtt
gatcttggtttccttgttgatgcctctggaagtattgaaatgtacggccgtggtaattac
cagcgcatgaaagacttcatcaaagaagtggcgggaagcttcgttgtctccaggcatgga
actcacgttggtttagtcgtgttcgccagcagacctgagccagtgttccagtttaacacc
tactacacgaggcgaggcgtcatgaatgctgtccaaaagatcccgtatatcaacggagga
acccggaccggcttagctataagaagagctactcggtacctgttcaaacctcgcccccaa
cccggacgaaagaaagtgttgattgtcatgacagacggtatctcgtacgatgatgttatt
gtcccagcaagaagacttcgtcgcactggtgtctccatatatgcactcggaatcggtctt
aagtacagtcgacggcagcttggcaaaattgccggaactccgagacatgtgtttacctcg
aagttcgcgactctccgaaaggccgctcgtaaaatcgtgagtcgcatatgcgcggaacca
ggagccaaacccataaaaccagttggtccaaaacctgttagacctcgccaaccagtacgt
gctgtggctatttatccactgaatggaggagtgaaaggccgcgacattagcttgagcaaa
aatccaaccgccatcctaagtaacgtgaggcccgcaccaggacctgaccggacccgcgat
ggatcgtaccagttctttggtaaatccaacagctacatccatttccctaatcgcggaaag
ttggataccagacgatcgattaccctgatggcgtggatctaccatcagggacgcgcagga
cccatcttcaactacatgccgaatggctggggcgtgcacttctggatgattacaccgaga
acgctgttcgtgcggtttacacgtcgacaaggacgccgctttactaaggcggtgatgagc
agaagagtcgtacccaatcgatggcagcttgtcgccacgacctttgatggaaggtccgga
caagctagactgtttattcaaaggcagtttgtggcccaagagtacgttggaagaatacga
ctggcaacgaattatcccgtgagaatgggagcacgtattggtgattcacggttcttcttt
ggacggatctcgtgtatgcaggtgtatccaatggcgctgacaagaagacaaatacttgcg
cgcaagacaaggtgctttagaaaagttattcgacctcctccaaggccaagaccgagaccc
ggacccaggcccaggccccaacctccaattcctggcccggcggggaagatatgccgtgcc
aaaatagacttggtcttcgtagttgatggctctgggagcatagaagcatacggcagagga
aacttcaagcgatgcctccgtttcgtcaaaaatatggttcgttcctttaccatatcaaga
agctacgtgagagttggaattgtggtttactcctcgcgctcacgattaatactcaccttc
aaccaaaatcgcggagttaacaatgtactccgcactatcgacagaatcagatatcccaga
agaggtacccgaacaggtgcagcgctctcatttgcttactcccgcctcttggctggcgca
aggaaacgaagttcaaaggttgtcatttgtatgactgatggtcgttcacaagatgatgta
agaggccctgccaacctgatgcgcaggcgtggtgtgaagatattttcgcttggtattggc
aaacgctacaacatgagacagttgcttcagatgtccggaaaccgtcgtaaggttttcaca
gctgacttcaaaaatctcggttccgtggtgcgcgctatcaagcagaaggcgtgtagagtt
tccaaaccaacgcgaccgactaagcctggaaaaccgtctgccgttggccgcgcaggcgct
gtgtatccactaagctcgtccacggctgcgagagatatcagtaccaatggcaatccgcca
ggccgacgcgtctatgtcaggtttaccccaggtcccgacggagtccggggaacagcgacg
tcgttttacggccgtgcgaacagctacatcgagtttccgaaccgcggtagactggacact
agaagatccatcacattgatagcctggatcagacaccttggacgcgcgggtccgatcttc
aactacatgccgaacggctggggcgtgcacttctggatggttaacccacggacgctattt
gcacgcttcacgcgtcgaagaggcaggcgcttcacacccgcagtgtccagtcgcacagtt
cgttaccgtgcatggaactatgtgggctgcacgtatgattatcgcactggcattgctagg
ctttttgttggaaacagatttgttgcgtctcgccgtattggtcgcattagacttgcaact
aattacccagtgagaatgggagccaggattggagacgggagatatttccgaggtagtatt
tcctgtatgcaggtgtataagaaggcgttgactgcaggacagatccttgcgagacgaacg
agatgctttaagagagttccacgaccgcagcctccacggccaagaccaagacctggccct
agacccaggcctcccattcgtccttaccctggtggaaaagtgtgccgggccagaatcgac
ctcgcctttgtcatagacgcttccggtagtgttggccgcgctaacttccgccgttgtcta
accttcgtcaaaaacatggcccgagtgttcacaatctcccgaagctacacccgctttgct
gtggtgctttattcatcgcgtccctctaaaatattcggtttcaatcgctaccttaatcaa
cactccctgcttcgagcgattggccgcatacgatacactggcggcggaactaagacgggt
tacgcactaacttacacttatcaaagactcctacgctacagcagacgaaagaacaaagtc
gtggttgtcatgactgatggtcgctcgtatgataaagtgcagccaccagccttggctatc
cgtcgtaaagggataaagatacttaccttaggggtaggaaagggctacagcatgaagcaa
ctgatacagatgtcatccaacagacgggatgttttcaccgctgattttaagaacttggga
tctgttgtgaagataatcaaaagaagagcttgtaaagctggtaaacctcgacctccgaga
ccaccacgcccaccaaaaccagttgtaataaaacgagctgtggctgtgtacccactgaac
cgtaacactcaaggcagagacatcagcttcgcaagaaatcccaacggtagactaggtagg
gtcagatttgccaagggacctgataacttgccgggcggttcgattgaattctttggccgt
agcaacagctacgtagagtttcctaaccgaggaaaactcgacactggtcgttctataact
ctattggcgtggatctaccatactggtcgagcaggacccatctttaattacatgccgaac
ggatggggcgtacacttttggatggttacaccgtcgacgctttttgcacggtttacacgt
cgtacaggaaggcgtttcacgcgggcgatttacagtcgaagtgtgaagccgcgtaaatgg
cagttcgttggtgctacctacaactacagaactggtgtagcgcgtttgtttgtgaactcg
cggtttgtagtgtccactcgtgtaggacaaataagactggcgactaactaccctgtcagg
atgggagcacgtattggagacagaagatatttcaagggaagagtttcatgcatgcaagtc
tatagccaagctttgaacaggaatcagatacttgttcgtcaaagaaggtgtttccgagca
gtgagacctcgacccagacctgtgcggccggtaagaccaactcgacctaaagttaaaacc
caagccgtggctattttccctctcaatggaggaaccaagggcagagacatcagtaaccgt
ggcaattcgcgcggaatactcagttatgtccgccctgcgcccggaccggatggaacacgt
gacggctcttatcagttctacggaagaagcaacagttatatccaattccctaaccgagga
ggcctagatactaagaattcaatatctctcctggcctggattttacatcagggacgcgca
ggacccatcttcaactacatgcccaacggttggggtgtgcacttctggatgattactccg
agaacgctgtttgtgcggtttacgcgccgcagaggacgccgctttacgagtgctgttgtt
agtaggagcgtgattccaggaagatggcagtttgtcggcgcaacgtataacggaagaaca
gggaaagcgaagttgtttgtaaacaacaaattcacggcaaggaagtacatcggacaaata
cggctggcgactaattacccagtgagaatgggagctcgtattggcgatggacgatatttc
cgaggacgaatctcctgtatgcaagtttacaatggggctttgtctcgctggaaaattaat
tctaagaaacgaagatgctttagaagaaaagttcgacctgggcccagaccccgcccacgg
ccacgaccagtaccacttccaagacctaagcccagacccaggccaaaacccggaaaagtt
tgtattgcgaaattggatctcgccttcctcatcgacggctcaggtagcgttggcttttca
aacttccgccgttgcctggtattcatccagaacgttattcgaggattcaggatctctcag
cgatacacacgcattgctgctgaagtttactcttcaactccacgcagaacattccaattt
acccgatacagtaatgcttaccaagtcctcagggccgttggatccataaagtacccgcgt
ggtggaacaaacaccgggaaggctctttgggacgtgcttagatacgtgttccgcggtagg
accaaccggaaaagggtcctttgtgtattgaccgacggacgttctcaagaccatgtgttg
aaacccgcccaagcgctgaagcgagcgaatgttgaagttttctcggtcggtgtcggcaga
ggatacagtattactcagctaaaccaaatggcaacagaccgcaatcacgtgttcacagtt
gatttcagaaacctcaactcaatcattaaggccattaaaaagaaggcttgtaaaggagga
cagaaaccaccatcgcctcacagaccctcaggaaccctgcgggcggttgctgtataccca
ttgaactccctcaccaagtcacgcgacattagcttcaacaggaatccgccgggtatcatg
tcaaatgttcgaccagccccaggtcccgacggacgacgtggaacaagctatgagttctta
gggcgacgcaacagctttatccagttccctaacttcggaaaaatagacaccaaaaaatcc
ataactattttagcttgggtataccaccagggtcgggcaggacccatattcaactatcac
cccagcgcgtggggtgtacacttctggatggttggaccacgcgctctgttcgttagattc
acgaagaggaggactaaagacttcacagctgctttaatgagccgaaccgttaagccaagt
cactggcaatacgtgggtgcctcctatgatcactcaactggaatggccaagttgttcgtc
ggtggaagactggtttcaaggaaacgaattggaagaatacgattggctacgaattatcct
gcgagaatgggggtgaggattggcgatggaaggtatttccgtggacgtatttcatgtctc
caggtttacagtgcccccttaaatgccagacaaatagctgcgcgtgcaaagagatgtttt
gttccaggacttcccaaaccacgcccgccaccacgcccaactggacagctgtttaaacga
agaggttgctataaagacagatctcgcagagccatgggtatacttcttggcaacctacga
cgaaggcgagatgcagtcatgcgttgctttcttttggcgtccaggcggggatatcgagca
ttcggtgtccaggatggcggagaatgcttctctggccctcaggcgcaccgcacgttcagc
aaatatggccgatcgggtagatgtaaaaatggaagaggaggaccatgggcgaatgatgtg
tatataattattagaaaacgacctattccgcgacctcttcctcggcccagacctcaacca
cgccctgctctaccagtttgcaaagcccgtttagacttgggcttcattgtagatggttcc
ggaagtgttggtcgtgcaaatttcattagatgtctgaacttcatcaagaatttagtcagc
tcgtttgtaatctctcccggccattctagagtgggacttctaatatactctcaccgcgtc
attccagtattctctttcggtcaacgcccacgtttgcgtggggtcctacgggcaattagt
agaatcaggtatcctggagggggtactaagaccggtaaggctctgtcttactctaggagg
tacctgttcgcccgaagcagcctccgtaagattttaatactgatgacagatggcaagtcg
tacgatagagtcaagaaacctgcagcagtgctacgtaacatgggagtgcaggtgtttgct
ctgggtgtcggaaaacgttacagcatgaaacaacttttgcagattgcaagcaatcgacgg
catgtctttacagcagactttaggaacttgggatcgtttgtgagggccatcaaacagaaa
gcttgtcgaggtattaccaagaaaccgaaaaaaccacacgccatgtccgctgtcgccata
ttcccgttcagtaaaacatacagaggaagagaacttcgcaacaggaacccaccaggttac
ccgtctcacgtcctattcacccccggtcccgatggattaccatacggttcttattacttc
cttggtcgaccaaacagctacgtggagattcctaacaaaggaacactggatgttcgtaac
tgcatcaccatcttggcctggatttatcacgaaggaaacgcaggaccgattgtgaactac
aagcgcaatggatggggcgtccatctctggatggtcaaccccagaacgctgtttgtgcgt
tatacacagcgtcttggacggcgcttcacgcacgctttggcgtaccgcggtgtaaaaccg
cgaacatggcagttcgttggaacttcgtacaatcgaaacacaggcgttgccaaattgtat
attaacggcaagatggtttcgcgccgaaagatcagaaagatttcattggctaccaattac
gagatcagagttggagcccgtcagggtgaccgtcgctatttccgaggtcgaattgcttgc
ttacaattttatagcgctgctttgacgactaacatgatccgtcggcgaatgagggcttgc
tttagaagaggtaagcttaaatggaagtctattttaaggagtggataa
DBGET
integrated database retrieval system
