Pocillopora damicornis (lace coral): 113686726
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Entry
113686726 CDS
T05773
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03013
Nucleocytoplasmic transport
pdam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113686726
09122 Translation
03013 Nucleocytoplasmic transport
113686726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdam03019
]
113686726
03041 Spliceosome [BR:
pdam03041
]
113686726
Messenger RNA biogenesis [BR:
pdam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
113686726
Spliceosome [BR:
pdam03041
]
Complex C
Other components
EJC/TREX
113686726
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113686726
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
113686726
NCBI-ProteinID:
XP_027060189
LinkDB
All DBs
Position
Unknown
AA seq
1635 aa
AA seq
DB search
MAAIVVPSNLVKNWEKSGKDEVFRLCKNCVRGKDGELLELNFQCGENDLKRVIYEVFNHV
IQGDLRQEDAIPLLSDVTEVHSGCSSLLADLICILDVESQCTEDKPSRERFLSLVGACVG
LVPEVLLKERLEVETLDSLGIIQSTKAFNQKYVRTKTKLFYKQQKFNLVREESEGYAKLV
TELGQEISGHVTSERVLENIKSLIGRFNLDPNKTLDVLLDSFECRIDVEDFFLPLLKSYM
EKCEFTALCHIIGFKFQFYKEQPDLPTPPSLFHLTALLIKHGLLNLDDLYLYLSPSDADI
VTSNTTRMDEAKQEARKMNMAVLAEIAAANNEEGNKENKENDKPTIVPDNQKFGLCEALL
MVGAWNNACSILDRLPQFAAVSHPPIAKGLCKLIHTTIEPLYRRHASKAARGRPYAPVPG
GPPQCKVFTDLPDYVFSMLLHLGPHLSTDPILMAKILRISKGFMKDHPNVFEEKEQNSAQ
VEKVWCGFLTLMDEVLLPSISLLECNSSLAEELWAMLCRFPYELRYRLYGQWKNESYSNH
PKMVVAKAATIKRAKYITKRLTKENVKPSGRQIGKLSHSNPGILFEYLLSQIQKYDNFIG
PVVDSLKYLTPLAYDVLAYCIIEALANPERERLKHEDTNISEWLKSLAVFCGTVFRKYSI
ELTGLLQYVANQLKAGKSFDLLVLKEVVQKMSGIEISEEVTAAQLEALSGGELLRAEGGY
FGQIRNTKKSSQRLRDTLIEGKLDLPLCLLMAQQRNGIVFFEDPDRHLKLVGKLYDQCQD
TLVQFGGFLASQLTAEEYESHVPSLDVLGQSYHLTPDVAFFLSRPMFVHQIDIKYEEAKK
AIAAKGKQLQQKQILQCYIEAVNSAMEPVFQSARLLQAPRVWNSISPQLYVTFWALSMFD
LYVPSERYEQELNKLKQQQAQLDDNKDMPVSKKKKEKERCSLLVEKLKEEFKQQEEHNQR
VMASLKHERDSWLPAKATKSETITQFLQLCMFPRCVFTASDAVYCAKFVHMLHNLKTPNF
STLLCFDRVFSDISYTVASCTENEASRYGRFLCSMLEIVMRWHGDKKTYDKECGTYPGFV
TVLRATNNDKADHLDYENYRHVCHKWQYKLTKALVVCLESKDYTQIRNTIMVLTKILPYY
PKVLNLGQALERRIDKICEEEKEKRQDIYTLAVGYAGRLKVKKRDMVIESEFHHKEKPLA
TTAPSSTQSEPVAVKQEKTEAQPTSTATSDSSKSAKNDTDVKPKLSVNIKKEPENSKSSS
PNSTKTDNTPTSQEKSAGKSSAGSSSAKSSGTSTPSGQTDSPGKNTPSNKSSSTSGNSNQ
PGSKTVASNSTSKGTKTPTSAKNSEGNTNGSDVSTGKKTESSKQKLKDKEKEKATEKEQN
DKPKEKLKGEKAEKAKEQKTKDKEKERSKSLEKEGKDKVKERLKDKEKERSGSKSKHSSP
AVPESPRDGEYEKEAKRRRLEGISSPSSQENSPSQVAGDSESFKSPENQERKSKLMDHEK
EKTLKSDRKRTSLEQGEGKEAKRRKEDGENTVTVSKTSNSHGSDAKVKVKGEEKSKMVKL
ARKPPADGSPPGKKEKEKAKDKEKDKDREKEKEVKPTASKKKESRHLEVKDSEPKEEQER
PRKHHSKSGSRNRRT
NT seq
4908 nt
NT seq
+upstream
nt +downstream
nt
atggcggctatcgttgtcccatccaatttagtaaagaattgggaaaaatcggggaaagat
gaagtgtttcgtttgtgcaagaactgcgtgcgaggcaaagatggagagcttctggaacta
aactttcaatgcggagagaatgatcttaaacgcgtgatctatgaagtatttaaccatgtt
attcaaggggatctaagacaggaagatgctataccgctcctgtcagatgtcacggaagtc
cattcaggatgttcatcactgctagctgacctgatatgtatcttggatgtggagagtcag
tgcacagaggacaagcccagcagggagaggttcttgtctctggtcggagcttgcgtggga
ttggttccagaagttctgctcaaggagaggcttgaagtggagacattggactcactagga
atcatacagtcaacaaaggcttttaatcagaaatatgtcaggaccaagactaaactattc
tataagcagcagaaatttaatcttgtgagagaggagagtgagggctatgccaaactggtg
acagaactgggacaagaaatcagtggacatgtcaccagtgagagagttctggagaacatc
aagtctctaatagggcggttcaatcttgatccaaacaaaactcttgatgtgttactggac
tcgtttgaatgccgcattgatgtagaggacttctttcttcctcttttgaaatcatacatg
gagaaatgtgaattcactgccctctgtcacatcataggctttaaattccagttttataag
gagcagcctgacttgcccacccctccatcacttttccatttgacagctctgcttataaag
catggtctactcaacttggatgacctttatctttatctcagtccctcagatgcagacatt
gtcaccagcaacacaacaagaatggatgaagccaaacaggaagcaaggaagatgaacatg
gctgtcttagcagaaattgctgcagcaaataatgaagaaggcaacaaggaaaataaagaa
aatgataaacctacaattgttccagataatcagaagtttggtttgtgtgaagcactgttg
atggtaggtgcgtggaataatgcttgttcaattctggacagattacctcagtttgctgct
gtgtcccatccccccatagccaagggattatgcaagcttattcatacaaccattgaacct
ctgtatcgaagacatgcttccaaggcagctagaggacgaccttatgcgcctgttccaggg
gggcctccacaatgcaaagtgttcactgatcttccagactatgtgttttccatgttgctt
catctgggccctcatttgtccactgatccaatcctaatggcaaaaatcctgaggatcagt
aaagggttcatgaaagatcatccaaatgtgtttgaggaaaaggagcagaattcagctcag
gttgagaaagtctggtgtggatttttgaccctaatggatgaagtcctgttgccatcaatt
tcattattggaatgtaactccagtttggctgaagaactttgggccatgttgtgtcgtttt
ccgtatgagctcaggtatcgcctctatggccagtggaaaaatgaatcttacagcaaccat
cctaaaatggttgtagcaaaagcagccacaataaagagagcaaaatacatcactaagagg
ttaactaaagaaaatgtcaagccctctggaaggcagattggcaaattgagtcacagcaat
ccaggcatattgtttgaatatctcttgtcacaaattcagaagtatgataactttattggg
cctgtggtggattcactgaagtacctcactcctttggcgtatgatgttttagcttattgt
atcattgaggctttggcaaatcctgaaagagaaaggctaaaacatgaagacactaacatc
tctgagtggctcaaaagtctagctgtattttgcggtactgtattccgcaagtattccatc
gagcttactggtcttctgcagtatgtggccaatcagctcaaagctggaaaaagttttgat
ttgcttgtgttgaaggaagttgttcagaaaatgtctggaatagaaatatcagaggaggtg
acagcagcgcaacttgaagctttgtctggtggcgaacttctgagggctgagggtggatac
tttggccagattagaaacaccaagaaatcttcccagaggttgagagacactctcatcgag
ggaaagttagatttgccgctctgcttgctcatggctcaacagaggaatggcattgtgttt
tttgaagatcctgatagacatctgaagcttgttggaaagctctatgaccagtgtcaagac
accttagtacagttcggtggctttctcgcctcgcagttaactgctgaagagtacgaatca
catgtaccgtccttggatgttttaggccaaagttatcatctaacacctgacgtggcattc
tttctgtctagacctatgtttgtccatcagatagatattaagtacgaggaagcaaagaaa
gcaatagctgccaaaggaaaacagcttcaacaaaaacaaattctgcagtgctacattgaa
gccgtgaattctgcgatggagcctgtgttccagagtgcacggctcttgcaggcaccaaga
gtctggaatagtatcagtcctcaattgtatgtgactttctgggcgctgtccatgtttgat
ctgtatgtaccatccgagagatacgaacaggaactgaataaattgaaacaacaacaagcg
cagctggatgataacaaggatatgccggtcagcaaaaagaagaaggaaaaagagaggtgt
tctcttttagtggaaaaattgaaagaagagtttaaacaacaggaagaacataaccaaaga
gtgatggcatcgcttaaacacgagagagactcatggctgccagctaaagcgacaaagagt
gagaccattacacagtttcttcagctctgtatgttcccgagatgtgtgtttactgcgagc
gatgctgtgtactgcgccaagtttgtccacatgctgcataatctcaaaacgccaaacttc
tcaacactgctctgctttgatagagtattttcagatatttcctacacagtggccagctgt
acagaaaatgaagccagtagatatggtcggtttttatgttcaatgcttgaaatagttatg
aggtggcacggtgacaagaaaacatacgataaggaatgtggaacttatccgggatttgtt
acagttttaagagctaccaacaacgataaagctgatcatttggactacgagaattacaga
cacgtttgccacaagtggcagtacaaactcacaaaggctcttgtggtgtgcttagaatct
aaggattatactcaaataaggaacacgattatggtgttaaccaagattttgccctattac
cctaaagtgttaaatcttggtcaagcgctggaaagaagaattgataagatctgtgaggag
gagaaggagaaacgacaggatatttacacgttagctgtagggtatgcaggtcgtttgaaa
gttaagaaaagagatatggtgatagagagcgaattccatcacaaggaaaagcctcttgca
accactgctccgtcgtcaactcagagtgaacctgttgctgtcaaacaggaaaaaaccgaa
gctcaaccaacttccacggcgacctcggactcatcaaaatctgcaaagaacgatacagat
gtgaagccgaagctctcagtgaacatcaaaaaagagccggagaactcaaaatcgtcgagt
cccaactcgaccaaaaccgacaacacgcccacatctcaagaaaaatcagctggcaaatca
agtgcaggctcatctagtgcgaaatcatctggcaccagtaccccaagtggtcaaactgac
tcgcctggaaaaaatacgcctagtaacaaatccagctctactagtggtaactcaaatcag
ccaggatccaaaactgttgcgtcaaattcaacctcaaaaggaacgaaaacacccaccagc
gctaaaaactcagaaggaaatacgaacggaagtgacgtgtctactggcaaaaagaccgag
tccagtaaacaaaagctcaaggacaaagaaaaagaaaaagctacggaaaaagaacaaaat
gacaaacccaaagaaaagttgaaaggagaaaaagcagagaaggctaaggaacagaaaacg
aaggacaaagagaaagagcgaagtaagagtcttgaaaaggaaggaaaagacaaagtgaaa
gaacgactgaaagataaggaaaaagaacggtcgggaagtaaaagtaaacattcctccccg
gctgtgcctgagtcgccgcgtgatggagagtacgaaaaagaagcgaagcgtcgccgactt
gaaggcatctcttcgccatcttcacaggagaactctccgtcgcaggttgctggtgattct
gagtcatttaagagtcctgaaaatcaggaacggaaatcaaaactgatggatcacgaaaag
gaaaagaccttaaaatcggacaggaaacggacttcgttagaacaaggtgaaggaaaagaa
gccaaaaggaggaaagaagacggagaaaatacagttactgtatccaagacatccaattcg
cacggatcagacgcaaaagtcaaagtgaaaggcgaggagaaatcaaaaatggtgaaactt
gctaggaaaccaccagcagatggttcacctcctggaaaaaaggagaaggaaaaagccaaa
gataaagaaaaagataaagaccgggaaaaggaaaaggaagttaaaccaactgcgagtaaa
aagaaagagtctcgtcaccttgaagtcaaagactctgaacccaaggaagaacaggaacgg
ccaaggaaacatcattccaagtcaggatcgagaaatcgcagaacatga
DBGET
integrated database retrieval system