Pseudoxanthomonas daejeonensis: MNQ95_07940
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Entry
MNQ95_07940 CDS
T08066
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pdd
Pseudoxanthomonas daejeonensis
Pathway
pdd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MNQ95_07940 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdd03019
]
MNQ95_07940 (rhlB)
Enzymes [BR:
pdd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MNQ95_07940 (rhlB)
Messenger RNA biogenesis [BR:
pdd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MNQ95_07940 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
UNK56116
LinkDB
All DBs
Position
1776595..1778313
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AA seq
572 aa
AA seq
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MSDKPLTDVAFSSFDLHPSLLAGLEAAGFTRCTPIQALTLPVALPGRDVAGQAQTGTGKT
LAFLVAVMNRLLTRPALAERKPEDPRALILAPTRELAIQIHKDAVKFGDELGLRFALVYG
GVDYDKQRELLQKGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPIRTERQTLLFSATLSHRVLELAYEHMNEPEKLVVETEFITAARVRQKMYFPA
DDEKVPLLLGLLSRSEGARTMVFVNTKAFVERVARALERGGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGVSHVYNYDLPFDAEDYVHRIGRTARLGAEGDAISF
ACERYAMGLPDIEAYIEQKIPTEPVTRELMTPLPRAPRERVEGEDAGEENESIGSIFREA
REQRAADEERRGGGRPSSRGGPGGSRGGGERREGERKPRRKPAAAVSTGEAVVASGAAGE
SPQPAADTRPPRSPQGARPAGEAQAEGDRGPRKRRRRRNGKPVDGVAPAGGADTAPSQVP
ATHQAPVAAPAGKKDSFLTRIGRKLRSLVPGG
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatgtagctttttcctctttcgacctgcacccctcgctg
cttgcgggactggaagccgcaggtttcacccgttgcactccgatccaggcgctgaccctg
ccggtcgcgttgcccggccgcgacgtcgccggacaggcgcagacaggcacgggcaagacg
ctcgcgttcctggtcgcggtgatgaaccgcctgctgacgcggcccgcgctggccgaacgc
aagcccgaggatccgcgcgcgctgatcctcgcgccgacccgcgaactggcgatccagatc
cacaaggacgcggtcaagttcggcgacgaactggggctgcgcttcgccctggtctacggc
ggcgtggactacgacaagcagcgcgagctgctgcagaagggcgtggacgtgatcatcgcc
accccgggccggctgatcgactacgtgaagcagcacaaggtcgtgtcgctgcacgcctgc
gagatctgcgtgctggacgaagccgaccggatgttcgacctgggcttcatcaaggacatc
cgattcctgctgcggcggatgccgatccgcaccgagcgccagaccctgctgttctcggcc
acccttagccatcgcgtgctggagctggcgtatgagcacatgaacgagccggaaaagctc
gtcgtggaaaccgagttcatcactgccgcgcgcgtgcgccagaagatgtatttccccgcc
gacgacgagaaggtgccgctgctgctgggcctgctgtcgcgcagcgagggcgcgcggacc
atggtgttcgtcaacaccaaggcgttcgtcgagcgcgtcgcgcgtgcgctggagcgcggc
ggctaccgggtcggcgtgctgtcgggcgatgtcccgcagaagaagcgcgagagcctgctc
aaccgcttccagaagggccagcttgaaatcctggtcgccaccgacgtggccgcgcgcggc
ctgcacatcgacggtgtcagccacgtctacaactacgacctgccgttcgacgcggaggac
tatgtccaccgcatcggccgcaccgcgcgcctgggcgccgagggtgacgcgatcagcttc
gcctgcgagcgctatgcgatgggcctgccggacatcgaggcctatatcgagcagaagatc
ccgaccgagccggtgacccgcgaactgatgaccccgcttccgcgggcaccgcgcgagcgg
gtcgaaggcgaggacgcgggcgaggagaacgagagcatcggctcgatcttccgcgaggca
cgcgagcagcgcgccgccgacgaggagcgtcgtggtggcgggcgtccttcttcgcgtggc
ggcccgggtggcagccgcggtggcggcgagcgtcgcgaaggcgagcgcaagccacgtcgc
aagccggcggccgcggtctccaccggggaagcggtagtggccagcggcgcggccggcgag
agtccgcaaccggccgccgacacgcgtccgccgcgctcgccccagggcgccaggccggca
ggcgaggcgcaggccgaaggcgatcgtggtccgcgcaagcgccgtcgccggcgcaatggc
aagccggtcgatggcgtagcgcctgccggcggagcggacaccgcaccgtcgcaggtacct
gccacgcaccaggcgccggttgccgcgcctgccggcaagaaggattcgttcctgacccgc
atcggccgcaagctgcgctcgctcgtaccgggcggctga
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