Paracoccus sediminicola: PAF18_02660
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Entry
PAF18_02660 CDS
T09284
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pdim
Paracoccus sediminicola
Pathway
pdim03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PAF18_02660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdim03400
]
PAF18_02660
Enzymes [BR:
pdim01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
PAF18_02660
DNA repair and recombination proteins [BR:
pdim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PAF18_02660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
WBU57365
LinkDB
All DBs
Position
534185..535609
Genome browser
AA seq
474 aa
AA seq
DB search
MIRVDLPRFRSFEAWRAAARQLASNRVAADEVRWAAPDDPAELFGAASVPGLGAQPVVAT
KDLLDLARQVSSHSDPERWGLLYAALMRTQEDRRFLSNPADPMRNRLERMAKSVRRDIHK
MHAFVRFHELPSKGSRRSFGAWFEPEHPILEAGTPFFAKRFADMDWLIATPEGIARFEGE
AIGFEPPAPRPDLPEDASHDLWQTYFANIFNPARIKTQAMRSEMPVKYWKNLPETRLIGE
MLADAPRRVQAMADAGATEAPAFAAKVTARLRQAPDDSAPDTMEAARAQALRCRRCDLCQ
HATQTVWGEGDPQAPLMIVGEAPGDHEDLAGRPFVGPAGQLLRQAMAETGIDPERAWLTN
AVKHFKFRPRGKRRLHQNPNAGEVQHCRWWLGLERRFVAPRVTVALGATAAYALTGNRDP
LTPRRGGVENGLIEGPVLITWHPSMILRETGPGARVAREQLVSDLIRARRMLAG
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcgtcgacctgccccggttccgcagcttcgaggcgtggcgggcggcggcacgg
caactcgccagcaatcgcgttgcggcggatgaggtgagatgggccgcacccgacgatccg
gcggagctgttcggcgctgcctcggttcctggcttgggcgcgcagccagtggtggcgacg
aaggatttgctggatctcgcccgtcaggtttcaagccattccgatcccgagcgctggggg
ctgctttatgcggcactgatgcggacgcaagaggatcggcgctttctgtccaacccggcc
gacccgatgcgcaaccggcttgagcggatggcgaaatcggtgcggcgcgacatccacaag
atgcacgccttcgtgcgcttccacgaattgccgtcaaaggggtcgcggcgcagcttcggc
gcctggttcgagccggagcatccgatcctcgaagccgggacaccgttctttgcgaagcgt
tttgccgatatggactggctgatcgccacgcccgaagggatcgcgcggtttgagggcgag
gcgatcggcttcgaaccgcccgctccgcgcccggatctgcccgaagatgccagccatgat
ctctggcagacctatttcgccaatatcttcaacccggcgcggatcaagacccaggcgatg
cgctcggagatgccggtgaaatattggaagaatctgccggagacgcggctgatcggcgag
atgctggccgatgctccgcgccgggttcaggccatggccgatgccggtgccaccgaagcg
cccgccttcgccgccaaggtcaccgcgcggctgcgccaggccccggatgacagcgcgccc
gacacgatggaggcggcgcgggcgcaggccctgcgctgccggcgctgcgatctgtgccag
cacgcgacgcagaccgtttggggggagggcgacccgcaggcgccgctgatgatcgtgggc
gaggcgccgggcgatcacgaggatcttgccgggcggccctttgtcggcccggccggtcag
cttttgcggcaggccatggccgagaccgggatcgatccggagcgggcctggctgaccaat
gccgtcaagcatttcaagtttcgcccgcgcggcaagcggcggctgcatcagaaccccaat
gcgggcgaggtgcagcattgccggtggtggctggggctggagcgtcgcttcgtcgcgcct
cgggtgactgtcgcgctcggggcgacggcggcctatgcgctgaccggcaatcgcgacccg
ctgacgccgcgccggggcggtgtcgaaaacgggctgatcgaggggccggtgctgatcacc
tggcatcccagcatgatcctgcgcgaaaccggtcccggcgcgcgggtggcgcgcgaacag
ctggtaagcgacctgatccgggcgcgccgcatgctcgcgggctga
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