Paraburkholderia dioscoreae: PDMSB3_1796.1
Help
Entry
PDMSB3_1796.1 CDS
T08115
Name
(GenBank) ATP-dependent DNA ligase
Organism
pdio
Paraburkholderia dioscoreae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DUF4527
Rbx_binding
Motif
Other DBs
NCBI-ProteinID:
VVD33080
UniProt:
A0A5Q4ZU58
LinkDB
All DBs
Position
II:complement(1857311..1858987)
Genome browser
AA seq
558 aa
AA seq
DB search
MKRFAALYTALDATTSTHDKLEALTSYFAAAEPEDAAWASYFLAGGKPRQSVPTRLLSEI
ARERAGLPAWLFEESYHAVGDLAETIAHILPPAQRNSELGLTQWIEHRVLTLRGAAPEEL
RTRLINYWDELDWGGRFLLTKLIGGGFRVGVARQLVVRALAEVAGVDHKRIAQRMVGWTD
SRQKPDAVRYLRLIAPEATSDDAQSGAPQHDSDLGLPYPFFLAHPLQADPATLGDPSQWQ
IEWKWDGIRAQLVKRGGRVWLWSRGEDLITDRFPEVAALGEALPEGFVIDGEILAWEPGA
SAPLPFARLQPRIARKTLTKKILADSPATLLAYDLLEAHGQDLRMTPLAERRAQLDALAT
TVDSTLARDLLRVSPLVSAPDWQALAALRDESRARGVEGLMVKERESMYGVGRTKASGTW
WKWKIDPYAVDAVLVYAQRGHGRRASLYTDFTFAVWDEADGVRTLVPFAKAYSGLTDEEM
RQVDAIVRKTTIEKFGPVRSVTPTLVFEIGFEGIQASPRHKSGVAVRFPRMLRWRTDKHI
DDADTLAMLKGFIDDRAG
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcttcgccgccctttacaccgcgctcgacgccaccacgtccacgcacgacaaa
ctcgaagcccttaccagctattttgcggcggcggagccggaagatgccgcttgggcgtcg
tattttctcgccggcggcaagcctcgccaatcggtgcccacgcgtcttttgagcgagatc
gcgcgcgagcgcgccggtctgccggcgtggttgttcgaggagtcttatcatgcggtgggc
gatctggccgagaccatcgcccatatcctgccgcccgcgcagcgcaactccgaactgggt
ctcacgcagtggatcgagcaccgcgtattgaccttgcgcggtgcggcgccggaagagttg
cgcacgcgtctcatcaactattgggacgaactcgattggggtggccgttttctgctgacg
aaactgatcggcggcgggtttcgcgtgggcgtagcgcggcaactggtggtgcgggcgctt
gcggaagtggcgggcgtcgatcataagcggatcgcgcaacgcatggtcggctggaccgac
tcgcgacagaagcccgacgcggtgcgctacctgcgtttgatcgcacctgaggcgaccagc
gacgatgcgcagtccggtgcgccccagcatgacagcgatctcggactgccctatccgttc
tttctcgcccatccattgcaagccgatccggcaacgctcggcgacccatcgcaatggcag
atcgaatggaaatgggacggcattcgcgcgcaactcgtcaagcgcggcgggcgggtgtgg
ctgtggtcgcgcggcgaggacctgatcacggaccggtttcccgaagtcgcggcgctaggc
gaagccttgccggaaggcttcgtgatcgacggcgagattctcgcgtgggaacccggcgca
agcgcgccattgccgttcgcgcgtttgcaaccgcgtattgcgcgcaaaacgctgacgaaa
aaaatcctcgccgattcgcccgccacgctgcttgcctacgatctgctcgaagcgcacggc
caggatctgcgcatgacgccgctcgccgaacggcgcgcgcaactggatgcattggcaact
accgtggacagcacgctcgcacgcgatctgctgcgcgtatcgccgctggtgagtgcgccc
gattggcaagccctcgcggcgctgcgcgacgagagccgggcgcgcggcgtggaaggtctg
atggtcaaggagcgcgagtcgatgtatggcgtgggccgcaccaaggcctccggcacgtgg
tggaaatggaagatcgatccgtatgcggtggacgcggtgctggtttacgcgcagcgcggc
cacggccgccgtgcgagtctctacaccgatttcacatttgcggtgtgggacgaagcggac
ggtgtgcgcacgctggtgccgttcgccaaggcttattccggtctcactgacgaagaaatg
cgccaggtggatgcgatcgtgcgcaagaccacgatcgaaaagttcgggccggtgcgcagc
gtaacgcccacgctcgtattcgaaatcggtttcgaaggcattcaggcgagcccgcgtcat
aagtccggcgtggcggtgcggtttccgcgcatgctgcgctggcgcacggacaaacatatc
gacgacgccgacacgctggcaatgctcaaaggcttcatcgacgaccgtgcgggataa
DBGET
integrated database retrieval system
