Paraburkholderia dioscoreae: PDMSB3_2875.1
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Entry
PDMSB3_2875.1 CDS
T08115
Symbol
icd
Name
(GenBank) Isocitrate dehydrogenase [NADP]
KO
K00031
isocitrate dehydrogenase [EC:
1.1.1.42
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio00020
Citrate cycle (TCA cycle)
pdio00480
Glutathione metabolism
pdio01100
Metabolic pathways
pdio01110
Biosynthesis of secondary metabolites
pdio01120
Microbial metabolism in diverse environments
pdio01200
Carbon metabolism
pdio01210
2-Oxocarboxylic acid metabolism
pdio01230
Biosynthesis of amino acids
Module
pdio_M00009
Citrate cycle (TCA cycle, Krebs cycle)
pdio_M00010
Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
PDMSB3_2875.1 (icd)
09106 Metabolism of other amino acids
00480 Glutathione metabolism
PDMSB3_2875.1 (icd)
Enzymes [BR:
pdio01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.42 isocitrate dehydrogenase (NADP+)
PDMSB3_2875.1 (icd)
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Gene cluster
GFIT
Motif
Pfam:
IDH
CAMP_factor
RodZ_C
Motif
Other DBs
NCBI-ProteinID:
VVD34159
UniProt:
A0A5Q4ZP49
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All DBs
Position
II:complement(2983066..2985294)
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AA seq
742 aa
AA seq
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MSTSPKIIYTLTDEAPALATYSLLPIVKAFTRSSDVIVETRDISLAGRIIAAFPDYLSAE
QKGSDDLAELGGLTTRPEANIIKLPNISASVPQLKAAIAELRDKGYKLPAYPDVATTDAE
KDVKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSADSKSHVSHMSDG
DFYGSEKSALIAAAGAVKIELTAADGSKTVLKEKTPVLAGELIDASVLSKNALRSFIEAE
IADAKAKGVLFSVHLKATMMKVSDPIIFGHVVSVFYKDVLTKYADVLAKAGFNPNNGIGD
LYARLKDLPAETREAIEADIKAQYEQRPPLAMVNSDKGITSLHVPSDVIVDASMPAMIRE
SGKMWGADGALHDAKAVIPDRCYAGVYQVVIEDCKKHGAFDPVTMGTVPNVGLMAQAAEE
YGSHDKTFQIPANGVVRVTDAAGTVLLEQAVEAGDIWRMCQTKDAPVQDWVKLAVNRARA
SNTPAVFWLDPVRAHDAQIIKKVEHYLKDHDTNGLDIRIMTPVEATQFSVDRIRAGKDTI
SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQLVEEGFL
RWDSLGEFLALAASLEHLGNEYHNPKALILAKTLDEATGKFLDNDKSPARKVGGIDNRGS
HFYLALYWAEALAAQTEDAALQAQFAGVAKALAESEAKIVEELGAAQGKPVDIGGYYRPN
VELTSKAMRPSATLNKIVDAIA
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgtccacatcgccgaagatcatctacaccctgactgacgaagcgcctgctctggcgacc
tactcgctgctgccgatcgtcaaggcgttcacgcgctcgtccgacgtgatcgttgaaacg
cgcgacatttcgctcgccggccggatcatcgctgcatttcccgactacctgagcgcggaa
cagaagggttccgacgatctggcggaactgggtggactcaccacgcgtccggaagcgaac
atcatcaagctgccgaacatcagcgcgtcggtgccgcaactgaaggccgcgatcgcggaa
ctgcgcgacaagggctacaagctgccggcctatccggacgtcgcaacgaccgacgccgaa
aaagacgtcaaggcccgctacgacaagatcaagggcagcgcggtcaacccggtgctgcgc
gaaggcaattcggaccgccgcgcgccgctgtcggtcaagaactacgcacgcaagcatccg
cacaagatgggcgcctggagcgcggactcgaagtcgcacgtctcgcacatgagcgacggt
gacttctacggcagcgaaaaatcggcgctgatcgcggcagccggcgcggtgaagatcgaa
ctgacggccgcggacggctcgaagacggtcctgaaagaaaagacgccggtgctggcgggc
gagctcatcgacgcttcggtgctgtccaaaaacgcgctgcgcagcttcatcgaggcggaa
atcgccgacgcgaaggcgaagggcgtgctgttctcggtgcacctgaaggccaccatgatg
aaggtgtcggatccgatcatcttcggccacgtggtgtcggtgttctacaaagacgtgctg
accaagtacgccgacgtgctggcgaaagccggcttcaatccgaacaacggtatcggcgac
ctgtacgcgcgcctgaaagatctgccggccgaaacgcgcgaagcgatcgaagccgacatc
aaggcgcaatacgaacagcgcccgccgctggccatggtcaattcggacaagggcattacc
agcctgcacgtgccgagcgacgtgatcgtcgacgcgtccatgccggccatgattcgcgag
tcgggcaagatgtggggtgcggacggcgcgctgcacgacgccaaggccgtgattccggac
cgttgctacgccggcgtctatcaggtggtgatcgaagactgcaagaagcacggcgcgttc
gacccggtcacgatgggcacggtgcctaacgtcggcctgatggcgcaagccgccgaagaa
tacggttcacacgacaagacgttccagatcccggcaaacggcgtggttcgcgtaacggac
gcagccggcacggtgctgctcgaacaggcggtggaagcgggcgacatctggcgcatgtgc
cagaccaaagacgcgccggttcaggactgggtcaagctcgcggtcaaccgcgctcgcgcc
tccaacacgcccgccgtgttctggctggatccggtccgcgcgcacgacgcccagatcatc
aagaaggtcgaacactacctgaaggatcacgacaccaacggtctggacatccgcatcatg
acgccggtcgaagcgacgcagttctcggtcgatcgtatccgcgccggcaaggacacgatt
tcggtcaccggcaacgtgctgcgcgactacctgaccgacctgttcccgatcatggaactg
ggcaccagcgcgaagatgctgtcgatcgtcccgctgatggcaggtggcggcatgttcgaa
accggcgcgggcggttcggcgccgaagcacgttcagcaactggttgaagaaggtttcctg
cgttgggattcgctgggtgaattcctggcgttggccgcgtcgctcgagcatctgggcaat
gagtatcacaacccgaaggcgctgattctggccaaaacgctggacgaggcaaccggcaag
ttcctcgacaacgacaagtcgccggcgcgcaaggttggcggtatcgacaaccgcggcagc
cacttctacctcgcgctgtactgggcggaagcactggccgcgcaaaccgaagacgccgcg
ttgcaggcacagttcgccggcgtggcgaaggcgctggctgagagcgaagcgaagatcgtc
gaagaactgggtgcggcacagggcaagccggtagacatcggcggttactatcgtccgaat
gtcgaactgacgagcaaggccatgcgcccgagcgccacgctgaacaagatcgtggacgcg
attgcttaa
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