Penicillium digitatum: PDIP_57400
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Entry
PDIP_57400 CDS
T04849
Name
(RefSeq) RNA helicase-like splicing factor (HRH1), putative
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pdp
Penicillium digitatum
Pathway
pdp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PDIP_57400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdp03041
]
PDIP_57400
Enzymes [BR:
pdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PDIP_57400
Spliceosome [BR:
pdp03041
]
Complex C
Other components
Step II factors
PDIP_57400
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
AAA_22
AAA_30
T2SSE
AAA_19
nSTAND3
ATPase
AAA_29
AAA_16
Motif
Other DBs
NCBI-GeneID:
26234056
NCBI-ProteinID:
XP_014532966
UniProt:
K9FN82
LinkDB
All DBs
Position
Unknown
AA seq
1231 aa
AA seq
DB search
MDDLESLELFSLVSRVTNEFENHLGIADKTLAEFVIDQHLKCNGKFSDFKKFFDDMGGEF
PQSLLESVDRMVLTMHPKYKGKKAENDKRTSGANDDMALLDALEQKSRVFKGLAVPDTEK
RWAEEDYTDREAADEADAQADAMDDTFAMLEGLAGKAKEDKPHASRNARGTRKRSRSPEN
NDYGRGRRRDKYRSRSRSRSAQRYNKTDDLVDEFGRSIGKCGNREDSRRNGHSDRRRHRD
RHEDDDFRHPPPIELDDHPILFKIYDGTVTGVKDFGAFVNLKGVKGKVDGLVHVSAMQEG
ARVNHPSDLVSRGQPVKVKVASIDGTRIGLSMKEVDQVTGMDLVPQKRLASGANMERLDG
GFADDRYGSLGSDVPVIEGSGGRPMRNRKRMTSPERWEIRQLIASGVASAADYPDIDEEY
NATLTGEGTFEEEEDVDIEVKDEEPPFLAGQTKQSLELSPIRVVKAPDGSMNRSAMAGTN
LAKERRELKQQEAQDKAAKKAADVDLNAQWQDPMVAPEERKFAADLRSAQQPKQDEAVPE
WKRATMGKNASFGKRTTMSMKQQRESLPVYKFRKQLLDAVKDNQMMIVVGDTGSGKTTQL
TQYLAEGGYGNTGMIGCTQPRRVAAMSVAKRVAEEVGCKLGAEVGYTIRFEDCTSPDTKI
KYMTDGMLQREILLDPDLKRYSVIMLDEAHERTIATDILFGLLKKTVKRRPDLRLIITSA
TLDAEKFSEYFHGCPIFSIPGRTFPVEVMYSKEPESDYLDAALITVMQIHLTEPQGDILL
FLTGQEEIDTACEILFERMKALGPTVPELVILPVYSALPSEMQSRIFDPAPPGGRKVVIA
TNIAETSITIDQIYYVIDPGFVKQNAYDAKLGMDSLVVTPISQAQAKQRAGRAGRTGPGK
CFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLTAL
EELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVDSGCSDEMLSIVAMLSIQSVF
YRPKEKQQQADQKKAKFHDPHGDHLTLLNVYNGWKNAGFNNSWCFENFIQARQIKRAQDV
RQQLMGIMNRYKHRIVSCGRDTMKVRQSLCTGFFRNAARKDPQEGYKTLVEGTPVYMHPS
SAMFGKPAEHVIYHTLVLTTKEYMHCTTAIEPKWLVEAAPTFFKVAPTDRLSKRKKAERI
QPLHNRFAGEDDWRISAQRRQGRGGGGGTWG
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atggatgacctcgagtctctggagctgttctcgctcgtctcgcgcgtgacgaacgagttc
gagaaccacctaggaatcgccgacaagacccttgcagagtttgtgatcgatcagcacctt
aaatgcaatggcaagttttccgatttcaagaaatttttcgacgacatgggcggcgaattc
cctcagagtctcctggagagtgtcgaccgtatggtgctcacgatgcaccccaagtacaag
ggaaagaaagcagagaacgacaagagaacttctggtgcaaacgacgacatggctttactt
gatgctctggagcaaaagtcccgcgtgttcaagggccttgcggtccccgatacggagaag
cgctgggcggaagaagactacacagatcgcgaagcggcagacgaggctgatgcacaagca
gatgcgatggacgacactttcgccatgcttgagggcctggcaggaaaagcgaaggaggac
aagccacatgcatcgaggaacgcccgtggaaccaggaagcggagccgcagccctgagaac
aacgattatggccggggacggcgcagagacaagtaccgctcgcgatcaaggtctcgaagt
gcccagcggtataataagaccgatgatctcgtggacgagttcggtagatcgattggaaaa
tgcggcaaccgggaagacagccgtcgcaacggccatagcgaccgtcggagacatcgtgat
cgccatgaggatgatgatttccgccatcccccccctatcgagctggatgatcaccccatt
cttttcaagatctatgatggaaccgtgacgggcgtaaaagatttcggtgctttcgtgaat
ctgaagggtgtcaaggggaaggtggatggtcttgtccatgtttcagcaatgcaagaagga
gcacgagtgaatcatccttcagatttggtctcgcgcggacagccagtcaaagtcaaagtg
gccagcatcgacggcactcgcattggactgtccatgaaggaggtggatcaagtgacaggc
atggatcttgttccccagaagcgccttgcttccggtgcaaatatggagcgtctcgatggc
ggattcgccgatgaccggtacggcagtctcggctctgatgtgcccgttattgaagggtct
ggaggtcggccaatgagaaaccgaaagcgcatgacttcgccagagcgctgggagatcaga
caattgattgcctccggtgttgcctctgcagcagattatccggacattgacgaggaatat
aatgcaacgctcaccggcgaaggcactttcgaagaggaggaagatgtcgacatcgaggtc
aaagacgaggagcctcctttcttggctggccagacgaagcaatccctcgaactttctcct
attcgtgttgtcaaggcccccgatggttcaatgaaccgttctgcaatggcaggcaccaac
cttgctaaggagagacgtgaattgaaacagcaggaagcacaggacaaggcggccaaaaaa
gcggcggatgtcgatctcaatgcacaatggcaggatcctatggttgcaccggaagagcga
aagtttgccgctgatcttcggagtgctcagcagcccaagcaggatgaggctgtaccagag
tggaagagagcaacgatgggcaagaacgcatcttttggaaagcgcacgaccatgtccatg
aaacaacaacgcgagagtctgcccgtatacaagttccggaagcagttgctggatgcagtg
aaggacaatcaaatgatgattgttgtcggagatacgggttctggaaaaaccacgcagttg
acgcagtacctggccgagggcggatatggaaatactggaatgattggttgcacacaacct
cgccgcgttgctgccatgtcagtggctaaacgtgtggccgaggaagttggttgcaagctc
ggagcagaggtaggatataccatccgtttcgaggactgtaccagcccagataccaagatc
aagtacatgaccgatggaatgcttcagagagaaattcttctggatccagacctcaagaga
tattccgttatcatgcttgacgaagcgcacgagcggacaattgcaactgatattctgttt
ggattgttgaaaaagacagtcaaacgacgacccgaccttagactgattatcacgtctgcc
acactagatgctgaaaagttctctgaatacttccatggctgtcccattttctccattcct
ggccgaactttccctgtcgaagtcatgtactccaaggagcccgaatctgattatctggat
gctgcgctcattactgttatgcaaattcacttgacagaaccgcaaggtgacattctgctt
ttcttaacgggccaagaagagattgatacagcatgtgagatcttattcgagcgcatgaaa
gccttgggacccaccgttcctgagttggtcatcctacctgtctattctgcactaccaagt
gagatgcagagtaggattttcgatccggcccccccaggcggacgcaaagttgtcattgca
accaatattgcagagacctcaatcacaattgatcagatttactacgtcattgaccccgga
tttgtgaaacaaaacgcctacgatgcgaagctcggcatggattctcttgtggtgactcca
atttcccaagcgcaagctaagcaaagagctggtcgtgctggaagaacaggacctggaaag
tgcttccgattgtatacagaggctgcctatcagtctgaaatgcttccaacgaccattccc
gaaattcagcgtcagaacctctcacataccattctcatgctcaaggcaatgggcatcaac
gacctcctccacttcgatttcatggacccaccgcctacaaacaccatgttgacagccctc
gaggaactatatgccttgtcagcacttgatgatgagggtcttttaactcgactcggacga
aagatggccgatttcccaatggaacctgcgcttgccaaggtgctcattgcatctgtggat
tcaggctgctccgacgaaatgcttagcattgtcgccatgctatcaattcagtctgtcttc
taccgccccaaggaaaagcaacaacaagcagaccagaagaaggccaaattccacgatccg
cacggcgatcatctgaccctcctcaacgtctacaatgggtggaagaacgcaggcttcaac
aattcctggtgtttcgagaactttatccaagcacgacaaatcaagcgcgcccaagatgtg
cgccagcagctgatgggcatcatgaaccgctacaagcaccgtatcgtctcttgcggtcgg
gataccatgaaggtgcgacagtccctgtgcaccggcttcttccgcaacgcagcgcgcaag
gacccccaggaaggatacaagaccctggtcgaaggaacgcccgtatacatgcaccccagt
tccgcgatgttcggcaagccggccgagcatgtcatctaccacaccttggtcctcacgacc
aaggagtacatgcattgcactactgccattgagccaaaatggcttgtagaagcggcgccc
acgttcttcaaggttgcacctacggatcgattgtcgaagcgtaagaaggcggagcgtatc
cagcctctgcacaatcgctttgctggcgaagacgattggcgtatttctgcccagcggcgg
cagggcagaggtggcggtggtggaacttggggttga
DBGET
integrated database retrieval system
