KEGG   Penicillium digitatum: PDIP_84190
Entry
PDIP_84190        CDS       T04849                                 
Name
(RefSeq) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pdp  Penicillium digitatum
Pathway
pdp03030  DNA replication
pdp03410  Base excision repair
pdp03420  Nucleotide excision repair
pdp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pdp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PDIP_84190
   03410 Base excision repair
    PDIP_84190
   03420 Nucleotide excision repair
    PDIP_84190
   03430 Mismatch repair
    PDIP_84190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pdp03032]
    PDIP_84190
   03400 DNA repair and recombination proteins [BR:pdp03400]
    PDIP_84190
Enzymes [BR:pdp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PDIP_84190
    6.5.1.6  DNA ligase (ATP or NAD+)
     PDIP_84190
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PDIP_84190
DNA replication proteins [BR:pdp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    PDIP_84190
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     PDIP_84190
DNA repair and recombination proteins [BR:pdp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PDIP_84190
   NER (nucleotide excision repair)
    Other NER factors
     PDIP_84190
   MMR (mismatch excision repair)
    Other MMR factors
     PDIP_84190
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 26236733
NCBI-ProteinID: XP_014532575
UniProt: K9F757
LinkDB
Position
Unknown
AA seq 853 aa
MADDKSRKQATLGRFFGSGANQPPKKQTTLAFGGTRQVASCKAADTETKNNADGATVEDA
TNSAPTASLNKTESTKGVKREKSVEAEESDGSDVQPVSKRRRRASPKKSESIKLKIESPS
PKASLKNPSDVTPEEKSPSVEEEEDPLESEDEDDLKPELTKKSIEKFQAKLQGSGKDPYP
DWKAGEPVPYAALCTTFSLVEMTRKRLEITDHCSLFLRQVLRLTPADFLPTVQLMINKLA
ADYAGVELGIGESLIMKAIGECTGRSLAIIKADQREIGDLGLVAAKSRSNQPTMFKPKPL
TVRGVHEGLLGIAKVQGHGSQDKKISGIKKLLAAADADTSGKGGKGVDVTKDKGGPSEAK
YIVRFLEGKLRLGLAEKTVLVAVSRAVQTHEAESTGKKIPSAEQMAEGENIFKTVYSELP
AYEVIIPAVLEHGLLKLPEVCKLSPGIPIKPMLAKPTKSITEVLDRFEGKEFTCEYKYDG
ERAQIHFVSPDSVHQYPGALDTLQKDSKGLSSIFSRNSEDLSKKYPDVLGKLDTWVKSDV
KSFVLDCETVAWDTEAKKVLPFQQLMTRKRKDVKAEDVKVKVCVYAFDLLFFNGEPCVKK
SLRERRELMHECFQPVEGEFQFAQYGNSNVLDEIQELLEASVKASCEGLMVKMLDTAESG
YEPSKRSRNWLKVKKDYLAGVGDSLDLVVLGAYYGRGKRTSVYGAFLLAAYNPSSDTYET
ICNIGTGFSEALLEELHQTLVPLVIDRPKPFYTHSAVPKDQPDVWFEPRLVWEVKTADLT
LSPRYQAAADEFQGTTGGGKGVSLRFPRFIKSRDDKKPDEATTTRAVAEMYRKQEAVTKE
TTSKGGVDDDFEY
NT seq 2562 nt   +upstreamnt  +downstreamnt
atggccgatgacaagagcaggaagcaggctaccctggggaggtttttcggctccggtgcc
aaccaaccgccgaaaaagcaaaccacattagcttttggtggaacgagacaagtagcaagc
tgtaaggctgctgatacagagaccaagaacaacgccgacggagctacagtggaagacgcc
accaactcagcaccaactgcctccctcaataaaacagagtcaacgaagggtgtgaagcgg
gaaaagagcgtcgaggcggaagaaagcgatggctctgatgtccagcctgtctctaagagg
cgacgaagggcatccccgaagaagtccgaatctataaagctgaagattgaatcgccatcg
cccaaagcatctcttaaaaacccatccgatgttactcctgaagaaaagtcaccgtcagta
gaagaagaggaggacccattggaaagtgaagatgaagatgacctcaagccggagctcacg
aagaagtcaatcgaaaaattccaagccaaattacaaggcagcggtaaagacccataccca
gactggaaagcaggtgaacctgttccatatgctgctttatgcacaacgttttcgctggtg
gaaatgaccagaaaacgcctagaaattacggaccactgttctcttttccttcgccaggtt
cttcgcctgacccccgccgatttcctacctactgtgcagctgatgatcaacaaattggca
gccgattatgccggggttgaactgggcatcggagaatccctgataatgaaagctattggt
gagtgtaccggccgcagccttgccatcatcaaagccgaccaacgggagatcggagatctg
ggactggtcgccgccaaaagtcggtcaaaccagcctaccatgttcaagcccaagcctttg
actgttcgaggtgtgcatgaaggccttcttggaatcgccaaggtccagggtcatggatct
caggacaagaagatttcaggaatcaagaaactattggccgcagccgatgccgatacttcg
ggaaagggaggcaaaggagtggatgtcaccaaggataaaggtggccccagcgaagccaaa
tacatagttcgctttttggagggtaagctgagactgggactcgcagagaaaactgttctt
gtcgctgtttctagagcagtccagactcacgaggctgaatcaaccggcaagaagatcccg
tccgcagagcaaatggctgaaggtgaaaacatcttcaagactgtttacagtgagcttccg
gcctacgaagtgatcattcctgctgtccttgagcatggtctcttaaagcttcctgaagtc
tgcaagctttctcctggaattcccatcaagcctatgcttgccaaacccaccaaatctatc
accgaagtccttgaccggttcgaagggaaggaattcacttgcgaatacaaatacgatgga
gaaagagcccagatacattttgtgtctccagattccgtccaccagtatcctggagccttg
gacacgttacagaaggacagcaagggactctcctccatcttctcccgcaactcggaagat
ctttcgaagaagtatcccgatgttctaggcaagcttgatacgtgggtcaaatctgacgtt
aagagctttgttcttgactgcgagactgtcgcatgggatacggaggctaagaaggttctt
ccattccagcaactgatgactcgcaagcgcaaggatgtcaaagcggaagatgtcaaggtc
aaggtctgcgtgtacgcctttgatctgcttttcttcaatggggagccatgcgtgaagaag
tctctacgggaacgccgagagcttatgcatgagtgcttccaaccggttgagggggagttc
caatttgcccaatatggtaactcaaatgtgcttgatgagatccaagaattgctcgaggcg
agtgttaaggcttcttgtgagggtcttatggtgaagatgctagacacagcagagagtggc
tacgagccaagcaagcggagtcgcaactggctgaaggtcaaaaaggattaccttgccggt
gttggtgactcccttgatcttgtcgtactcggtgcctactatggtcgtggaaaacgcact
tcggtttatggtgccttccttctcgctgcctacaaccctagcagcgacacatatgagacc
atatgtaacatcggcactggcttctctgaggcactacttgaagagctacaccagactcta
gttcctctggtaattgaccgcccaaagccattttacactcactcagctgtccccaaggac
caaccggatgtttggtttgagccaagactggtatgggaagtaaaaacagccgatctgacg
ctcagtccgcgctaccaagccgctgccgatgaattccaaggaacaaccggtggtggaaag
ggtgtgtctctgcgtttcccgcggtttatcaaatctcgcgacgataagaagccagatgag
gcaactaccacccgtgctgtggcggagatgtatcggaaacaagaagcggtcaccaaggag
actacaagcaagggaggcgtggatgatgactttgagtattaa

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