Pseudonocardia dioxanivorans: Psed_0328
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Entry
Psed_0328 CDS
T01479
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pdx
Pseudonocardia dioxanivorans
Pathway
pdx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Psed_0328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdx03400
]
Psed_0328
Enzymes [BR:
pdx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Psed_0328
DNA repair and recombination proteins [BR:
pdx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Psed_0328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AEA22601
UniProt:
F4CQK3
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All DBs
Position
373507..374439
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AA seq
310 aa
AA seq
DB search
MQPMLATPGALPTGPGWVYEVKWDGMRLLADVRDGLVRLLTRGGRDVAGSFPELARLDAV
APDLLLDGEVVLLDRGVPSFTALTERIHGAVSPARAAARPVTFMVSDVLRLYGVDLTARP
LEERRGTLERLDLTRVPAVSLSPSYTDGSALLAATAQRGMEGIVAKRADSPYTPGRRTAW
IEVTHRLTRTCVVGGWRPERSNPTRIAALLVGVPGRDGLRFAGRVTAGLAGDAVQRILHG
ALDGLTTVAPPFDEPLPRVDGAGARWCEPLVVAEVAHAGTEGGRLLRPEFRGLRDDLDPA
DVDPFPAPAG
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcccatgctcgccacccccggcgcgctcccgaccggccccggatgggtctacgag
gtcaagtgggacggcatgcggctgctcgccgacgtccgcgacgggctcgtccggctgctc
acccggggcgggcgcgacgtggcgggcagcttccctgagctcgcccggctcgacgccgtc
gccccggacctgctgctcgacggcgaggtcgtcctgctcgaccgcggcgtccccagcttc
accgcgctcaccgagcgcatccacggcgccgtcagccctgcgcgggcggcagcccggccg
gtcaccttcatggtgtccgacgtgctgcgcctctacggcgtcgacctcaccgcgcggccg
ctggaggagcgccgtggcacgttggaacgcctggacctgacgcgcgtgcccgccgtctcg
ctctcgccgtcctacaccgacggcagcgcgctgctcgccgcgacggcgcagcgggggatg
gaggggatcgtcgcgaaacgggccgacagcccctacacaccgggacggcgtacggcctgg
atcgaggtgacccaccggctcacccggacgtgcgtcgtcggcggctggcgcccggaacgc
tcgaacccgacgcggatcgcggcgctgctggtcggcgtgcccgggcgcgacggcctgcga
ttcgcgggccgggtcaccgcggggctggcgggcgacgcggtgcagcgcatcctgcacggc
gctctcgacggcctgacgacggtcgcgcccccgttcgacgagccccttccccgtgtcgac
ggggcgggcgcgcggtggtgcgagccgctcgtcgtcgccgaggtcgcgcacgcggggacc
gagggcggtcggctgctccggccggagttccgggggctgcgcgacgatctcgaccccgcc
gacgtcgaccccttcccggcgcccgccggctga
DBGET
integrated database retrieval system
