Pseudonocardia dioxanivorans: Psed_3272
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Entry
Psed_3272 CDS
T01479
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pdx
Pseudonocardia dioxanivorans
Pathway
pdx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Psed_3272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdx03400
]
Psed_3272
Enzymes [BR:
pdx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Psed_3272
DNA repair and recombination proteins [BR:
pdx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Psed_3272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AEA25462
UniProt:
F4CVX7
LinkDB
All DBs
Position
3490183..3492168
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AA seq
661 aa
AA seq
DB search
MFAFGSPSHKALSLTLVPLEEYRRKRDRSRTPEPVPDTDPAADGSDHDGGRFVVQEHHAS
ALHWDVRLERDGVLVSWAVPKGLPVDTETVRLAVRTEDHPMEYLDFSGEIPAGEYGAGTM
TIWDAGTYRTEKWSAREVAVVLQGQRARGRFVFVRSDRERRDGWILRRSDPGTARDPLPR
DTLPMLATPGPLPLGDGWWLQVGFGGERVVVRVDGGRARFTDADGAELEVPALRAFGPTV
GATPLLLDAELVGNPRRDAVLWIGDLLHLDGRDTLDVPFADRLALLEGLELVGPAWRPAP
AYRDAGQAVVDAAAEQGLPFVVAKRGDSPYRPGRRSDDWIEVATTAPAPAARRDRPATAA
RPGRRDGVGRARLTNPDKVLYPLTGTTKAQVLGHYLAVAEVMLPHLRDRPVTMVRWPDGV
EKPSFFEKDVSRHAPGWIRTARVGTPGGRSESADFPLLDDAEGLAWAANLAALELHVPQW
RVGPRGGRGLPDLVVFDLDPGEGANVVDCCRVAERIADLLAADGLSAHPRTSGSKGLQLY
VPVTVSRAERTAEYARDIAATVAGESPRTVTDVMAKARRRGKVFVDWSQNNPAKTTIASY
SLRGRPRPTVATPVTWDEVRACRTVDDLVFTLDDLPGRIAEHGDLMAPLLFTERPRLPRR
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcattcggatcgccgtcacacaaggctcttagcctgacgctcgtgccgctggag
gagtaccgccgcaagcgcgaccggtcgcgcaccccggagcccgtgcccgacaccgatccg
gcggccgacgggtccgaccacgacggcggccggttcgtcgtgcaggagcaccacgcgagc
gcgctgcactgggacgtccggctggagcgcgacggcgtgctggtctcgtgggcggtgccg
aagggcctgccggtcgacacggagacggtccggctcgccgtgcgcaccgaggaccatccg
atggagtacctcgacttctccggcgagatcccggcgggcgagtacggcgccggcacgatg
acgatctgggacgccgggacctaccggaccgagaagtggtcggcgcgggaggtggccgtc
gtcctgcagggccagcgcgcccgcggccggttcgtgttcgtgcgcagcgaccgcgagcgt
cgcgacggctggatcctgcggcgctcggatcccggcaccgcgcgcgacccgctgccgcgc
gacacgctgccgatgctcgccacccccggtccgctccccctcggcgacggctggtggctg
caggtcgggttcggcggcgaacgcgtcgtcgtgcgggtcgacggcggccgcgcgcggttc
accgacgccgacggggccgagctggaggtgccggcgctgcgggcgttcgggccgacggtc
ggggccaccccgctgctgctcgacgcggagctcgtcggcaacccacgtcgcgacgccgtg
ctctggatcggcgacctgctgcacctcgacgggcgcgacaccctcgacgtcccgttcgcc
gaccggctggcgctgctggagggcctcgagctcgtcggccccgcgtggcgcccggccccg
gcctaccgcgacgccgggcaggcggtcgtcgacgccgccgccgagcagggcctgccgttc
gtcgtcgcgaagcgcggtgactccccctaccggcccggcaggcgcagcgacgactggatc
gaggtggcgacgacggcgcccgcacccgccgcccgccgggaccgccccgcgacggccgcg
cggccggggcggcgcgacggtgtcggccgcgcgcggctgaccaaccccgacaaggtgctc
tacccgctcaccgggacgaccaaggcgcaggtcctcggccactacctggccgtcgccgag
gtgatgctgccgcacctgcgcgaccggcccgtcacgatggtgcgctggcccgacggcgtc
gagaagccgtcgttcttcgagaaggacgtctcccggcacgcgccgggctggatccggacc
gcgcgcgtcggcacgccgggcgggcggtcggagtccgccgacttcccgctgctcgacgac
gccgagggcctggcgtgggcggcgaacctcgcggcgctggagctgcacgtcccgcagtgg
cgcgtcggtccgcgcggcggccgcggcctgcccgacctcgtcgtgttcgacctcgacccg
ggcgagggggcgaacgtcgtcgactgctgccgcgtcgccgagcgcatcgccgacctgctc
gccgccgacgggctcagcgcccacccgcgcaccagcggcagcaagggcctgcagctgtac
gtgcccgtcaccgtctcgcgggccgagcggaccgccgagtacgcccgcgacatcgctgcg
acggtggccggggagtcgccccgcacggtcacggacgtgatggcgaaggcgcgccgccgc
ggcaaggtcttcgtcgactggagccagaacaaccccgcgaagacgacgatcgcgagctac
tcactgcgcggccggccccgccccaccgtcgcgacgccggtgacctgggacgaggtccgg
gcctgccgcaccgtcgacgacctggtgttcaccctcgacgacctgcccgggcgcatcgcc
gagcacggtgacctgatggcgccgctgctgttcaccgaacggccacgccttcctcgtcgc
ggctga
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