Pseudonocardia dioxanivorans: Psed_4663
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Entry
Psed_4663 CDS
T01479
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pdx
Pseudonocardia dioxanivorans
Pathway
pdx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psed_4663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdx03019
]
Psed_4663
03016 Transfer RNA biogenesis [BR:
pdx03016
]
Psed_4663
Enzymes [BR:
pdx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Psed_4663
Messenger RNA biogenesis [BR:
pdx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Psed_4663
Transfer RNA biogenesis [BR:
pdx03016
]
Prokaryotic type
tRNA degradation factors
Psed_4663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
AEA26811
UniProt:
F4D123
LinkDB
All DBs
Position
complement(4998125..5000377)
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AA seq
750 aa
AA seq
DB search
MTDPITDDVHETTAVIDNGSFGTRTIRFETGRLARQAAGSVVAYLDDETMLLSATTASKQ
PKEQFDFFPLTVDVEERMYAIGKIPGSFFRREGRPGTDAILTCRLIDRPLRPSFVDGLRN
EIQIVVTVLSLDPRDPYDALAINAASASTQLAGLPFSGPIGGVRVALIDGQWVAFPQYED
LQRAVFDMVVAGRIVGDDVAIMMVEAEATTETVELVAGGAQAPTEQVVAQGLEAAKPFIR
SLCVAQQQLADVAAKPTGSFPTYPAYQPDAFEAVEAAASDDLAAALTIAGKQEREARIDE
VKAGVLASLGEKFEGREKELGAAFRSLNKKLVRRRILTDQVRIDGRGLTDIRPLSAEVEV
VPRAHGSALFERGETQIMGVTTLNMLRMEQQIDSLGPETHKRYLHHYNFPPYSTGETGRV
GSPKRREIGHGALAERALLPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNA
GVPLKAPVAGIAMGLVSDEVDGKATYVALTDILGAEDAFGDMDFKVAGTSDFVTALQLDT
KLDGIPSEVLAAALNQAKDARLTILEVLGEAIDGPDEMSTYAPRVTAIKVPVDKIGEVIG
PKGKMINSITEQTGADISIEDDGTIYVGAADGPSAEAAIGMINAIANPQLPKIGERFLGT
VVKTAAFGAFVSLVPGKDGLVHISKLGNGKRIGKVEDVVKVGDKLRVEVTDIDNRGKISL
VPVQEESAAAGGDDTAPAEGEPVAAAAEAE
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcccatcaccgatgacgtccacgagaccacggccgtcatcgacaacgggtcc
ttcgggacccgcaccatccggttcgagaccggccggctcgcccggcaggccgccggctcc
gtcgtcgcctacctggacgacgagaccatgctgctgtcggccaccacggcctcgaagcag
cccaaggagcagttcgacttcttcccgctgacggtcgacgtcgaagagcgcatgtacgcg
atcggcaagatcccgggctcgttcttccgccgcgagggccgcccgggcaccgacgcgatc
ctcacctgccggctcatcgaccggccgctgcgcccgtcgttcgtcgacggcctgcgtaac
gagatccagatcgtcgtgacggtcctctcgctcgacccgcgcgacccctacgacgcgctg
gccatcaacgccgcctcggcgtcgacccagctcgccgggctgcccttctcgggcccgatc
ggcggcgtccgcgtcgcgctgatcgacggccagtgggtcgccttcccgcagtacgaggac
ctgcagcgggccgtgttcgacatggtcgtcgccgggcgcatcgtgggtgacgacgtcgcg
atcatgatggtcgaggccgaggccacgaccgagacggtcgagctcgtcgccggcggcgcg
caggcgcccaccgagcaggtcgtcgcgcagggcctggaggcggccaagccgttcatccgc
agcctgtgcgtcgcgcagcagcagctggccgacgtcgccgccaagccgacgggctcgttc
ccgacctacccggcctaccagcccgacgcgttcgaggcggtcgaggccgccgcgagcgac
gacctggccgccgcgctgaccatcgcgggcaagcaggagcgcgaggcgcggatcgacgag
gtcaaggcgggcgtgctggcctccctcggtgagaagttcgagggccgcgagaaggagctc
ggcgccgcgttccggtcgctgaacaagaagctcgtgcgccgtcgcatcctcaccgaccag
gtgcgcatcgacggccgcggcctcaccgacatccggccgctctcggccgaggtcgaggtc
gtcccgcgggcgcacggctcggcgctgttcgagcgcggcgagacccagatcatgggtgtc
accacgctgaacatgctgcgcatggagcagcagatcgactcgctggggccggagacgcac
aagcgctacctgcaccactacaacttcccgccgtactcgaccggtgagaccggccgcgtc
ggctcgcccaagcgtcgcgagatcggccacggcgcgctcgccgagcgtgccctgctgccg
gtgctgccgacgcgcgaggagttcccctacgccatccggcaggtgtcggaggcgctgggc
tccaacgggtccacgtcgatgggctcggtctgcgcgtcgacgatgtcgctgctcaacgcc
ggtgtgccgctgaaggcgccggtcgcgggcatcgcgatgggcctggtgtccgacgaggtc
gacggcaaggccacctacgtggcgctgaccgacatcctcggcgccgaggacgcgttcggc
gacatggacttcaaggtcgcgggcacgtcggacttcgtcaccgcgctgcagctcgacacc
aagctcgacggcatcccgtccgaggtgctcgcggccgcgctgaaccaggcgaaggacgcg
cggctgacgatcctcgaggtcctcggcgaggccatcgacggccccgacgagatgagcacc
tacgcgcctcgcgtcaccgcgatcaaggtcccggtcgacaagatcggcgaggtcatcggc
ccgaagggcaagatgatcaactcgatcaccgagcagaccggcgcggacatctcgatcgag
gacgacggcaccatctacgtcggtgcggccgacggcccgtccgcggaggcggcgatcggc
atgatcaacgccatcgccaacccgcagctgccgaagatcggcgagcggttcctgggcacg
gtcgtcaagaccgcggccttcggcgccttcgtctcgctggtccccggcaaggacggcctc
gtccacatctcgaagctgggcaacggcaagcgcatcggcaaggtcgaggacgtcgtcaag
gtcggcgacaagctgcgcgtcgaggtcaccgacatcgacaaccgcggcaagatcagcctc
gtcccggtgcaggaggagtcggccgccgcgggtggcgacgacaccgcacccgccgagggc
gagcccgttgccgcggccgccgaggccgagtga
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