Peptostreptococcus equinus: O0R46_01915
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Entry
O0R46_01915 CDS
T08671
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
peb
Peptostreptococcus equinus
Pathway
peb03030
DNA replication
peb03410
Base excision repair
peb03420
Nucleotide excision repair
peb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
peb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O0R46_01915 (ligA)
03410 Base excision repair
O0R46_01915 (ligA)
03420 Nucleotide excision repair
O0R46_01915 (ligA)
03430 Mismatch repair
O0R46_01915 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
peb03032
]
O0R46_01915 (ligA)
03400 DNA repair and recombination proteins [BR:
peb03400
]
O0R46_01915 (ligA)
Enzymes [BR:
peb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O0R46_01915 (ligA)
DNA replication proteins [BR:
peb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O0R46_01915 (ligA)
DNA repair and recombination proteins [BR:
peb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O0R46_01915 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O0R46_01915 (ligA)
MMR (mismatch excision repair)
DNA ligase
O0R46_01915 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O0R46_01915 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
DUF6642
tRNA-synt_1c_C
zf-NADH-PPase
RNA_ligase
Nop10p
DUF6085
zf-ISL3
Motif
Other DBs
NCBI-ProteinID:
WAW15230
LinkDB
All DBs
Position
382086..384167
Genome browser
AA seq
693 aa
AA seq
DB search
MENLFIEEISKAYDSNRIDIKKGEELVETLSQKLNYYSERYYDFDNPEISDQEYDSLMKS
LIFLEEKYPELKKEDSPTSRVGGKALDKFEQYIHERPMLSLSNVFSEEEIRSFDRRVREG
CSGEVSYVVEFKIDGLSVGLTYENGKLVVGATRGDGYIGENVTSNIKTIKTIPRNINEKR
KLIARGEVYISKEDFLEINRIQQENELTLYANPRNLAAGSLRQLDPKLAAKRPLDIFIFN
LENIDELEIEKHSQSFEYMKSLGLKINESYKLCNNIEQVIEYINIWTEKRHDLDYEIDGM
VIKVDDIVQREQLGFTAKSPRWATAYKFPAERKKTKLLDIQVEVGRTGNITPTAILEPVR
LAGTSVSRATLHNEDYIKEKDIRIGDTVLVQKAGDIIPQIIQVDKEERNGQEEVFTMPTH
CPACGEETVRIEGESAVKCINISCPAQIRRGIIHFVSRDAMDIDKMGESIVTSLLDNELI
KEISDIYYLNPDDLIKLERMGEKSVSNLMNSIEKSKENELWRLINGLGIKYVGVKGSKML
AKSYRSLDDIMKTSKEDLMNIEDFGNVMSDSLIKFFQEDKNIEIIEKLRRAGLNFNSKEE
VNSNAQIFEGMKIVLTGTLPTLKRNDAKKLMEDRGASATSSVSKSTDFVLAGEEAGSKLD
KAISLGIKIIDEEIFMKLIGLNSKEEVMEKLGE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatttatttatagaagaaatatcaaaagcttatgattctaaccgaattgatata
aaaaagggggaagaattagttgaaacattaagccaaaaattaaattattatagtgaaaga
tactatgattttgacaatccagaaataagtgatcaagaatatgactcattgatgaaatca
cttatatttttagaagaaaagtatccggaactaaaaaaggaagactctccaacttcaaga
gtaggaggtaaggctctagataaatttgaacagtatatacatgaaagacctatgttaagt
ctatcaaatgtattttctgaagaagaaataagatcatttgataggagggttagagagggt
tgtagtggtgaagttagttatgtagtagaatttaaaatagatggtttgtcagttggactt
acttacgaaaatggaaagcttgtagtaggagctacaagaggagatggttatataggtgaa
aatgtaactagcaatattaaaaccattaaaactatccctaggaatataaatgaaaaaaga
aaattaatagcaaggggcgaagtctatatttcaaaagaagatttcttagaaatcaataga
atacagcaagaaaatgaacttactctctatgcaaatcctagaaatctagcagcagggtct
ttgagacaattggatccgaagttagcagcaaaaagaccactagatatattcatatttaat
ctcgaaaatattgatgaattagaaatagaaaaacatagtcagagtttcgaatatatgaaa
tctttaggattgaaaataaacgaatcatataaactatgtaataatatagagcaagtcata
gagtacataaatatttggacagaaaaaaggcatgaccttgactatgaaatagatggaatg
gtaataaaggtcgatgatatagtgcaaagagaacaattaggatttacagcaaaaagtcct
agatgggcaactgcatataagtttccagcagagagaaaaaagaccaaacttttagatatt
caagtagaggtgggaaggacgggtaatattactcctacggctattttagagccagtaaga
ttggctgggacaagtgttagcagggcaacacttcacaatgaagattatataaaagaaaaa
gatattaggataggtgatacagtattagtacaaaaggctggagacattattcctcagatt
attcaagtagacaaagaagaaagaaatgggcaagaggaagtttttactatgccaactcat
tgtccagcttgcggggaagaaactgtaagaattgaaggtgaatctgcagttaaatgcatt
aacatctcatgccccgcacaaattagaagaggtattattcattttgtatctagggatgct
atggatatagataaaatgggagaatctatagtaacatcattactggacaatgaattaata
aaagaaatttcagatatatattatttaaatccagatgatttaataaaattggaaagaatg
ggagaaaaatctgtttcaaatcttatgaattcaattgaaaaatcaaaagaaaatgagctt
tggagactaataaatggtttgggaataaagtatgttggtgtaaaaggatcaaagatgttg
gccaaatcatatagaagtttagatgatataatgaaaactagtaaagaagacttaatgaac
atagaagactttggcaatgtaatgtccgatagtttaattaaatttttccaagaagataag
aatattgaaataatagaaaagcttagaagggcaggattgaattttaattcaaaagaagaa
gtaaatagtaatgcccaaatatttgaaggtatgaaaatagtactgacaggaacattacca
actttaaagagaaatgatgcaaaaaagcttatggaagacagaggggcaagtgccacatca
agtgtaagtaagtctactgattttgtattagcaggtgaagaagctggatctaaactagat
aaggcaattagcttaggaataaagattattgatgaagaaatatttatgaaacttatagga
ttaaatagcaaagaagaagtaatggaaaaattaggagagtaa
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