Candidatus Pelagibacter sp. IMCC9063: SAR11G3_01132
Help
Entry
SAR11G3_01132 CDS
T01465
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
pel
Candidatus Pelagibacter sp. IMCC9063
Pathway
pel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAR11G3_01132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pel03400
]
SAR11G3_01132
DNA repair and recombination proteins [BR:
pel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAR11G3_01132
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAR11G3_01132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
RsgA_GTPase
nSTAND1
AAA_25
ATPase
DnaJ_CXXCXGXG
AAA_21
nSTAND3
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AEA81607
UniProt:
F2I193
LinkDB
All DBs
Position
complement(1002117..1004981)
Genome browser
AA seq
954 aa
AA seq
DB search
MLKKIVVKGAKEHNLKNLSVEIPRDQLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSA
YARQFLDRMKKPNVDLIEGLSPAISIEQKTTSKNPRSIVATVTEIYDYMRVLYARVGTPY
SPFTGKAIKSQTVSEMVDKILDLAKPSRVSIYSPIVRGRKGEYKKEILSLKKRGYTKIKI
DEALYEIDETPNLNKKITHNIEVQIDKFVNKKEEQKRIAESLEAALNLSDGLVYVEHFDE
NLPKQHQKLEKIVFSSKFACPESGFTIEEIEPRLFSFNSPYGACSECEGLGVDLYVDPKL
VIPDERMSLIDGAIKPWAKSTNLYYAQTLASLAKHYDFSLDTDWKKLSKAHQEVILYGSG
NEEIKFNYDDGYEKRANKKSFEGVISNLERRYLETDSDWKREEIEQYQSEKECERCKGYR
LKEEALCIKILNKNISEVAKFSIKEAHLWFGSLGKDLTEKENKIATHILKEINERLTFLI
NVGLDYLNLSRGSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQKDNIKLIEAL
KRLRDLGNTVIVVEHDEEAMLHSDHIIDIGPGAGIHGGKVISEGNFKHISNDKSSLTGDY
LSGRKFISIPKNRRTALNGRYLHLSGATGNNLKNVSAKIPLGALTCVTGVSGSGKSTFIL
HTLYRALNLMINKVITRNMPQAFKGIKGFEYLDKIIDIDQSPIGRTPRSNPATYSGAFTP
IREWFTNLPESKSRGYKPGRFSFNVKGGRCEACEGDGVITYEMHFLPDVYVECDVCKGKR
YNRETLEIKHKEKSIADVLSMSVDESVKFFENIPTIRDKLLTLQKVGLGYMSIGQQATTL
SGGEAQRIKLAKELSKRSTGRTIYILDEPTTGLHVHDVKKLLEVLQAFVQKGNTVVVIEH
NMEVIKTADWIIDMGPDGGDKGGNIVFEGTPEQLLNIKESYTGKFLKKILSKKN
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaaaaaattgttgttaaaggtgctaaagagcacaatttaaaaaatctttctgtt
gagatacctagagatcagttggtcgttataactggactttctggctctggaaagtcctct
ttggcattcgatactatttacgcggagggacaaagaagatatgtggaaagtctatctgct
tacgcaaggcaatttttggatagaatgaagaagccaaatgttgacttgatagaaggacta
tcgccagccatatctatagaacagaaaaccacttctaaaaaccccaggtctattgttgca
acagtgactgaaatttatgattatatgagagtcttgtatgctcgagttggaaccccctac
tctcctttcacagggaaggctattaaatcacaaacagtctcagagatggtagacaaaatt
ttagatctggcaaaaccatcgcgggtatctatttactcaccaattgtaaggggaagaaag
ggtgaatacaaaaaggaaatactttcattaaaaaaaagggggtacacaaaaattaaaatt
gatgaggcgctttatgaaatcgatgagactcccaacttaaataaaaaaattacacataat
attgaagttcaaattgataaatttgtaaacaaaaaagaagaacaaaaaagaattgccgaa
agtttagaggctgctttaaatttgtcagacggccttgtttatgttgaacattttgatgaa
aacttacctaagcaacatcaaaaattagaaaaaattgttttctcctctaaatttgcctgt
ccagaaagcggctttactattgaagaaattgaaccaagactgttttcatttaacagtcca
tacggagcatgttccgaatgtgaaggccttggagtcgatctttatgtagaccctaaatta
gttattcctgacgaaagaatgtcattaatagatggagctattaagccgtgggccaaatct
acaaatttatattatgctcaaactttagcttctttggctaaacactatgacttttcatta
gatactgattggaagaagctatctaaagcacaccaagaagtgattttgtatgggtctggt
aatgaagagataaaatttaattatgatgatgggtatgaaaaacgcgctaataaaaaatct
tttgaaggagttattagtaatttagaaagaagatatttagaaacagacagtgactggaaa
agagaggaaattgaacaataccaaagtgaaaaagaatgtgagcgatgcaaaggatatagg
ttaaaagaagaggccctttgtataaaaatattaaataaaaatataagtgaagttgcaaag
ttttctattaaagaagctcatttatggtttggctctttaggtaaagatttaacagaaaaa
gaaaataaaattgccacacacatattaaaagagattaatgaacgattaacctttctaatc
aatgttggtcttgactatttgaatttgtctagaggttctggaactttatctggtggtgaa
tctcaaagaataagattggcctcacaaataggttcgggtcttacaggggttctgtatgtt
ttggatgaaccttccataggattgcatcaaaaagacaatataaagctcatagaggccctt
aaaagactaagagatcttggaaatacagtaattgtagtcgagcacgatgaggaagctatg
cttcattctgatcacattatagatattggtcctggtgcgggaatacatggtggaaaagta
atttctgaaggaaattttaaacacatttcaaatgacaaaagtagcttaactggagattat
ctttcaggaagaaaatttatctctatacccaaaaacagacggacagctcttaatggaagg
tatcttcatttatctggagctactggaaataatttaaaaaatgtatctgctaaaattcct
cttggagcgttaacttgtgttactggtgtttccggaagtgggaaatcgacttttatatta
cacactttgtaccgagccttgaatttaatgatcaacaaggtaatcactaggaatatgcct
caggcatttaaaggcataaaaggctttgaatatttagataaaattattgatatcgatcaa
tcaccaattggcagaacaccaagatccaacccagccacttattctggtgcattcacccct
ataagagaatggttcacaaatttacccgaatctaaatctcgaggatacaaacctggaagg
ttttctttcaatgtaaaaggtggacgatgtgaagcctgtgaaggagatggagtcataaca
tatgaaatgcactttttgccagatgtttatgtggagtgtgatgtctgtaagggaaaaagg
tacaaccgagaaacacttgaaattaagcataaagaaaaaagcattgctgatgtgttgagt
atgtcagtagatgagagtgttaaattttttgaaaatattcctacgattagagataagctt
ttgaccttacaaaaagtaggacttggctacatgagcattggtcagcaagccacaacctta
tctggaggtgaggcacagagaattaaattggcaaaagagttgtcaaaaagatcaacggga
agaactatttacatattggacgaacctactactgggttgcatgtgcatgatgtaaaaaaa
ctattagaggtccttcaggcttttgtccaaaaaggaaatacagttgttgtaattgaacat
aatatggaagtgatcaagacagcagactggattatagacatgggtccagatggtggcgac
aaaggtggtaatattgtatttgagggaacacctgaacagcttttgaatataaaagaaagc
tacactggaaaatttctaaaaaaaatacttagcaaaaaaaattaa
DBGET
integrated database retrieval system
