Populus euphratica (Euphrates poplar): 105115437
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Entry
105115437 CDS
T05872
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105115437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
peu03041
]
105115437
Enzymes [BR:
peu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105115437
Spliceosome [BR:
peu03041
]
Complex C
Other components
Step II factors
105115437
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
ABC_tran
Sigma54_activ_2
AAA_16
TsaE
Flavi_DEAD
T2SSE
PhoH
Motif
Other DBs
NCBI-GeneID:
105115437
NCBI-ProteinID:
XP_011010620
LinkDB
All DBs
Position
Unknown
AA seq
1173 aa
AA seq
DB search
MATAAEIDAGLKKLEYLSLVSKVCSELETHLGFGDKILAEFITELGRSCETVDDFDAKLK
ENGAEMPDYFVRTLLTIIHAILPPKAEKEGKKDKENDGSGKDSKFKALSIKDSRDRVKEI
DRELEIEAEEKSRRENEDRHRERDNDGRRRERDRRERDRDRERDRDRERERDMYDRDDRR
RDRGRRRDGHDIEDGEGERERRNGRHGYGGGNSNEPELYGVYKGRVSRVMDTGCFVQLSD
FRGKEGLVHVSQIATRRVGNAKDVVKRDQEVYVKVISVSGNKLSLSMRDVDQNSGKDLLP
LKKRDDEEDGFRSNALGLSKEGPVTRTGLSGIRIVEEEDTGPSRRPLKRMSSPEKWEAKQ
LIASGVLSVQEYPMYDEEIDGLLYQEEGVEEELEIEMNEDEPAFLQGQTRYSVDMSPVKI
FKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQE
LRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLV
VIGETGSGKTTQVTQYLAESGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYA
IRFEDCTGPDTVIKYMTDGMLLREILIEENLSQYSVIMLDEAHERTIHTDVLFGLLKKLV
KRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVL
QIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIF
DPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAK
QRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGFTTLTMKAMGINDLLSFDF
MDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEI
LTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFEN
FVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYR
TLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVSD
PTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgcagcagaaatcgacgccggattgaagaagctcgagtacctctccctcgtc
tccaaggtctgcagcgaactcgaaactcacttggggtttggagataagatcttagctgag
ttcatcaccgagttaggtcggagctgcgaaacagtagatgatttcgatgcgaagctgaag
gaaaatggagctgaaatgcctgattactttgttcggacattgctgacgattattcacgcg
attttgccgccgaaagcggagaaggaggggaagaaagataaggagaatgacgggtcaggt
aaagattctaaatttaaagctctctcgattaaagatagtagagacagagtgaaagaaatt
gatagggaattggaaattgaagctgaagagaaaagtaggagagagaatgaagacaggcat
agagaaagagataacgatggtagacgtagagagagagataggagagagagagatagggat
agagagagggatagggatagagagagagagagagatatgtatgatagagatgataggagg
agagatagaggaagaaggagagatgggcatgatatagaggatggtgaaggtgagagggag
agaaggaatgggagacatgggtatggtggtggtaatagtaatgagccagaattgtatggg
gtttataaggggagggtgtcgagggtgatggatacaggttgttttgtccagttgagtgat
tttagggggaaggagggtttggttcatgtttcacagattgcaactaggagagttgggaat
gcaaaggacgtggttaagagggaccaggaagtttatgttaaggtgatttcagtttcgggg
aacaagttgagtctttcgatgagggatgttgatcagaatagtgggaaagatttgcttcca
ttgaagaagagggatgatgaggaggatggttttaggagcaatgctttgggtttgtctaag
gaggggccggtgacgaggacagggttgtcagggattaggattgtggaggaggaggatact
ggtccgtcacggagacctttaaagagaatgagctcgccagagaagtgggaagcaaaacag
ttgattgcttcgggggttttgagtgtgcaagagtaccccatgtatgatgaggaaatagat
gggttgctttatcaagaagagggagttgaggaagagcttgagattgagatgaatgaggat
gagcctgcatttttgcaaggacagactaggtattctgttgatatgtcaccagttaagatt
tttaagaatcctgaaggttcgttgagtcgtgcagctgctcttcagtctgcacttataaag
gagaggagagaagtaagggagcagcagcagaggactatgcttgattcaataccaaaggat
cttaatcgtccttgggaagacccgatgcccgagactggcgagaggcatcttgctcaggag
ctgcgtggtgttggcttatctgcttatgacatgcctgaatggaagaaggatgcatttggg
aaagcgctgacatttgggcagcgatccaagttgtctatccaggaacagaggcagagcttg
ccaatttacaaattgaaaaaagagttaattcaggctgtccatgacaatcaggttctggtg
gttattggtgagacaggttcaggtaagactactcaggtgacacagtatctcgccgagtca
ggttataccactaggggtaagattggatgtactcagcctcgtagggtggctgctatgtct
gtagccaagagggtggctgaagagtttggctgtcgtttaggtgaagaagttggctatgct
attcgttttgaggattgcactggaccagatactgtgatcaagtatatgacagatggtatg
ctgcttagggagattctgattgaggagaacctgtctcagtactcggtgataatgctagat
gaagctcatgagaggaccattcacactgatgtccttttcgggttgctcaagaaacttgtg
aagagaagacctgatcttcgcttgattgtcacatcagccacactggatgcggagaaattt
tcagggtatttcttcaactgtaacatattcacgattcctgggagaacatttcctgtggag
atattgtacaccaaacagccagaaagtgactacttagatgcatctctgattaccgtcttg
caaatccacttgacagaacctgaaggtgacatacttctattcttgacaggccaggaggag
attgattttgcatgtcagtctctttatgagaggatgaaaggattaggaaaaaatgttcct
gaattgatcattttgcctgtttatagtgctcttcctagtgaaatgcagtcaagaatcttt
gatcctgccccacctggaaagaggaaggtggttgtggcaactaatattgctgaagcctct
ttgacgattgatggaattttttatgttattgatcctgggtttgccaagcagaacgtgtat
aatccaaagcaagggcttgattctctagttataacacctatttcacaagcatctgccaag
caacgagctggccgtgctgggcgtactgggcctggaaaatgttatcgtctctacacagaa
agcgcataccgcaatgagatgtctcccacctcaattccagaaatccaaagaattaatctt
ggattcaccacgcttacaatgaaggctatgggaattaatgacctattgtcttttgatttt
atggatccaccttcaccgcaggcccttatttctgccatggaacagctatacagtcttgga
gctctggatgaggaaggacttctgaccaaactagggaggaaaatggcagaatttcctctg
gatccaccattgtctaaaatgttgctggctagtgtagacctcgggtgcagtgatgagatt
ttgactatcattgccatgatccaaactggtaacatcttttacagacctagagaaaaacaa
gctcaggctgatcagaagagggccaagtttttccagcctgagggagaccatctgactttg
cttgctgtatacgaggcttggaaagccaagaacttttcaggaccttggtgttttgagaac
tttgtccaatctcgatcgttgaggagagcacaggatgtcagaaaacagcttctaagcatc
atggataagtataaactagatgttgttagtgctgggaagaattttaccaagataaggaaa
gcgattacagctggattctttttccatgcagctagaaaggacccacaggagggttatagg
actttggttgagaaccagccagtttatatccaccccagcagtgctcttttccagagacaa
ccagactgggtcatctaccatgagctggtaatgactacaaaagagtatatgcgtgaggtc
acggttatagatcccaaatggcttgtggaactagctcccaggttctttaaagtatcagat
cctacaaaaatgagcaagcgaaagcgtcaagaacgcattgaacctctctacgatagatac
cacgaacctaattcatggcgtttgagtaaaaggcgagcatga
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integrated database retrieval system
