Populus euphratica (Euphrates poplar): 105125637
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Entry
105125637 CDS
T05872
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
peu
Populus euphratica (Euphrates poplar)
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
peu03041
]
105125637
Spliceosome [BR:
peu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
105125637
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_19
TPR_MalT
Suf
TPR_12
NRDE-2
TPR_16
TPR_10
Motif
Other DBs
NCBI-GeneID:
105125637
NCBI-ProteinID:
XP_011024477
LinkDB
All DBs
Position
Unknown
AA seq
813 aa
AA seq
DB search
MGDSETVVTEPSAVMDYPAAVYASTGYADSGSVVVPGPGDFNVEGTGNFAASTVAAQGGH
TGNTYGADSSSGVPEAHVGINSSAENTAAGGYDSAVNGNIGTEAGVAVSAENGNAGEALG
GAAPEQHFVDGSVPEMSAEEDHLWSIVKANSLDFDAWTALIDETEKVAGDRILKIRKVYD
AFLVEFPLCYGYWKKYADHEARLGFMDKVVEVYERAVLGVTYSVDIWLHYCMFAISTYGD
PETVRRLFERGLAYVGTDYMSYPLWDKYIEYEEVHAEWGRVAMIYTRILEIPNRKLDDYF
NRFKAFAASRPLSELKTAEEAAAAVAPTLSEDRSQADEGEVHPDLAEQPSKPVSAGLTEA
EELEKYIAIREEIYKKAKEFDNKIVDFENAIRRPYFHVRPLNVAELENWHNYLDDIERED
DFNKVVKLYERCVIACANYTEYWIRYVLCMEATGNMDLANNALARATQVFVKRQPEIHIF
AARLKEQNGDLSGARAAYQVVHAEIAPGLLEAIIKHANMEHRLGNLEDAFSLYEQAIAIE
KGKEHSQVLPALYAQYARFVYLASNNVEKAREILLEGLENAQFSKPLLEALIHFETFLPH
PKRIDYLDSLVDKFILPSSDIVNAASASEREELSCIFLEFLGIFGDAQSIKKAADRHAKF
FLPHRSKSELKKRHAEDYLASDKAKMAKPYPDATSPAQSLMGAYASAQNQWTAGYGVQPQ
AWPPATQVQTQQWAPGYNQQAAYGAYSGYGGSYPNPQAPTSVAQGAAYGGYPPTYPAQQA
FPQQSYAQPTAVAPLTQPQQPAAAPQPYYGTYY
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgggagatagtgagacagtagtaactgaaccgtctgcagtcatggattatccggcagct
gtgtatgcgtctactggctatgctgattctggttcagttgttgttcctggccctggtgat
tttaatgtggaaggcactggaaattttgctgcttctactgttgcagcacagggaggtcat
acgggaaatacatatggtgcggactctagttctggtgtaccagaggcgcatgttggaata
aacagtagtgctgaaaacacagctgctggtggttatgattcggctgtgaatggaaatatt
ggaactgaagctggagttgctgtatcagctgagaatggaaatgctggagaggctttgggt
ggagctgctcctgagcagcattttgtggatggttctgtgccagaaatgtcagctgaagaa
gaccacctgtggagcattgttaaggctaattctttggattttgatgcatggactgcctta
atagatgagacagagaaggtggctggggacaggatattgaaaattcgaaaagtgtatgat
gcttttttggtggaatttcctttgtgttatggttattggaagaagtatgcagatcatgaa
gcacgccttggttttatggacaaagttgttgaggtatatgaacgggctgttcttggggtc
acatattcggtggacatttggttgcattattgtatgtttgccatatccacatatggagat
ccagagactgtcagaaggctttttgagcgaggattagcttatgttggaacagattatatg
tcttatcccctctgggataagtacattgaatacgaagaggtgcatgcagagtggggccgt
gttgccatgatttatacacggatattagagattcctaacagaaagctggatgattatttc
aatagatttaaggcttttgctgcaagccggcctttgtcagaattaaagactgctgaggaa
gctgctgctgctgtagcacctacactttcagaggatagaagccaagcagacgagggggag
gttcatcctgatttagctgaacagccttctaaacctgtaagtgctggcttaacagaagca
gaggagttggagaagtatatcgctattagagaggaaatttacaagaaagctaaagagttc
gataataagatcgttgactttgaaaatgctattaggaggccctactttcatgtacggccc
cttaatgttgcagagctcgaaaactggcataactatctggatgatatagaaagagaggat
gactttaataaggtggtcaagctatatgaaagatgtgtaattgcatgtgctaattatacc
gagtattggatacgctatgtcttgtgcatggaagccactgggaacatggatcttgcaaat
aatgctcttgctcgtgcaactcaagtatttgtcaagagacaaccagagatccacattttt
gctgcccgtctcaaagagcaaaatggagatttatctggtgctcgagctgcttaccaagtt
gtacatgctgaaattgcacctggtcttcttgaagcaattattaagcatgcaaacatggag
catcgattggggaatcttgaagatgccttctccttgtatgaacaggctatagccattgaa
aagggaaaagagcattcacaagtgttgccagcattgtatgcacaatacgctcgatttgta
tatttggcatcgaacaatgtagagaaagccagggagattctattagaaggacttgagaat
gcccaattttcaaaaccacttcttgaggctttgatacattttgagacatttctgccacat
ccaaagcgaattgattatcttgattcactggtagataagttcattttgcccagctcagac
atcgtcaatgctgctagtgcttcagagagggaagaactatcctgcattttcttggagttt
ttaggtatatttggagatgctcaatctataaagaaggctgctgatcggcatgccaagttc
ttcttaccccacaggagcaagtcagagttgaaaaagcgccatgcggaggattacctagct
tcagacaaggcaaaaatggccaaaccttaccctgatgcgacttcacctgcacagtctctg
atgggtgcatatgcaagtgcacagaaccaatggacagctggttatggtgtacagcctcaa
gcatggccaccggctacccaagtacagactcaacagtgggctccaggctataaccaacaa
gctgcatatggcgcatatagtggttatggaggcagctaccctaatccccaagctcctaca
tcagttgcacaaggtgcagcttatggtggttatcctcctacctatcctgcccagcaggcc
ttccctcaacaaagttatgcacaacccacagctgtggcaccattgactcagcctcagcag
cccgctgctgctccacaaccttactacgggacttactactga
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