Pantoea eucalypti: EE896_17985
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Entry
EE896_17985 CDS
T06282
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pey
Pantoea eucalypti
Pathway
pey03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pey00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EE896_17985 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pey03021
]
EE896_17985 (rpoC)
03400 DNA repair and recombination proteins [BR:
pey03400
]
EE896_17985 (rpoC)
Enzymes [BR:
pey01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EE896_17985 (rpoC)
Transcription machinery [BR:
pey03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EE896_17985 (rpoC)
DNA repair and recombination proteins [BR:
pey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EE896_17985 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
QGF28601
LinkDB
All DBs
Position
complement(3856010..3860233)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEHEKNEQDEWVAKTSIIDTTIGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKVEIITEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEVVINRDGAEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLDEHWCDVLELNSVDSLKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSAGKLVITSRNVELKMIDEFGRTKESYKVPYGSTMAKGDGEQVAAGETVANW
DPHTMPVITEVGGFIRFTDMVDGQTITRQTDDLTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVKISAGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIVSAGSADFLEGEQAEFSRIKISNRDLEANGKVGATFMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAAGEVPV
APQVTADEASASLAELLNAGLGGNKND
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgcgctggcttcgccagacatgatccgttcctggtcttttggtgaagtgaaaaag
ccagaaaccattaactaccgtacttttaagccagagcgcgatggtctgttctgtgcccgt
atcttcgggccggtaaaagactatgagtgcctgtgcggcaagtataagcgcctgaaacac
cgtggtgtgatttgtgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgaactggcgtcgccgactgcgcacatctggttcctgaagtcactg
ccatcgcgtatcggcttactgctggatatgccactgcgtgacatcgagcgcgtgctctac
tttgaatcttacgttgtaatcgaaggtggcatgaccaacctcgagaagcgtcagatcctg
actgaagagcagtaccttgacgctctggaagagttcggtgacgagttcgacgccaaaatg
ggcgccgaagcgatccaggccctgttgaaaaacatggatctggagcaggagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaaacgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtctggtaacaagccagagtggatgatcctgacc
gtgctgcctgttctgccaccggatctgcgtccgctggtaccgctggatggtggccgtttc
gcaacgtcggatctgaacgatctttatcgtcgcgtgatcaaccgtaacaaccgtctgaag
cgcctgctggatctggctgcgccagatatcatcgtacgcaacgaaaagcgtatgttgcag
gaagcggtcgatgcactgctggacaacggtcgtcgcggtcgtgcgatcaccggttccaac
aagcgtccgctgaaatcgctggctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgtcgactattctggtcgttcggttatcaccgttggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaaaatggcactcgaactgttcaaaccgttc
atttacggcaagctggaactgcgtggcctggccaccaccatcaaagccgcgaagaaaatg
gttgagcgcgaagaagcggttgtctgggatatcctcgacgaagtgatccgtgagcacccg
gttcttctgaaccgtgcgcctacgctgcaccgtctgggtattcaggcctttgaaccggtt
ctgatcgaaggtaaagcaatccagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtcgactaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtattacatgacccgtgactgtgttaacgct
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtgtttatcgcgctggc
ctggcctctctgcatgctcgcgttaaagtgcgtatcactgaacacgagaaaaacgagcag
gatgagtgggttgctaaaaccagcatcatcgatacaacgattggccgtgccatcctgtgg
atgatcgtgccgaaaggtctgccgttctctatcgttaaccaggcgctgggcaaaaaagct
atctccaaaatgcttaacacctgttaccgcattctgggtctgaagccgacggttatcttt
gctgaccagaccatgtacaccggtttcgcttacgctgcccgttcaggcgcgtcagtcggt
atcgatgatatggttattccagagaagaaagtggaaatcatcaccgaagcggaagcggaa
gtggctgaaattcaggaacagttccagtctggtctggtaaccgcaggcgaacgttacaac
aaagtcatcgatatctgggcagcagccaacgaacgtgttgccaaggcgatgatggaaaac
ctctctaccgaagttgtgattaaccgcgacggtgcagaagagcgacaggtttcctttaac
agcatctttatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagctg
gccggtatgcgtggtctgatggcgaaaccagatggttccatcatcgaaacaccaatcacg
gcgaacttccgtgagggtttgaacgtacttcagtacttcatctcaacccacggtgcacgt
aaaggtctggcggataccgcactgaaaacggcgaactccggttatctgacgcgtcgtctg
gttgacgttgcacaggatctggttgttaccgaagatgactgtggtacacacgaaggcatc
atgatgacgcctgtcatcgaaggtggcgacgttaaagagccactgcgtgaacgtgtactg
ggtcgtgtgacggcagaagacgttctgaagccgggcactgctgacattctggtcccacgc
aacacgctgctcgatgagcactggtgtgacgtgctggaactgaactcagttgacagcctg
aaagtccgctctgttgtaggttgtgaaaccgactttggtgtgtgtgcgcattgctacggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcgatcggtgttatcgcagca
cagtccatcggtgagccaggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcacgtgcggctgctgaatccagcattcaggtgaagaacaaaggtaccatcaagctg
accaacgccaagtccgtaacgaactcggcaggcaagctggtgatcacctcgcgtaacgtt
gaactgaaaatgatcgacgaatttggtcgtaccaaagagagctataaagttccttatggt
tctaccatggcgaaaggtgatggtgagcaggttgccgcgggcgaaaccgttgcaaactgg
gatccgcataccatgccagtcatcaccgaagtgggcggtttcattcgcttcactgacatg
gttgatggccagaccattacccgtcagacagatgacttaaccggtctctcttcgctggtg
gttctggacagtgctgaacgtactgcgggcggtaaagatctgcgtcctgcgctgaaaatt
gttgatgccaacggcaacgacgttctgatcccgggcaccgatatgccggctcagtacttc
ctgccaggtaaagcgattgttcagctggaagatggcgttaagatcagtgccggtgacacg
ttagcgcgtgttccgcaggaatctggcggtaccaaagatatcaccggtggtctgccacgc
gttgctgacctgttcgaagcgcgtcgtccgaaagagcccgctattctggcagagatcagc
ggcatcatctccttcggtaaagagaccaaaggtaagcgtcgtctggtcattaccccgctg
gatggtagcgagccgtacgaagagatgattccgaaatggcgtcagctgaacgtgttcgaa
ggtgaacgtgttgagcgcggtgacgtggtttccgatggcccagagtctccacatgacatc
ctgcgcttgcgtggcgtgcatgcggtgacccgttacatcactaacgaagtgcaggaagtt
taccgtctgcagggcgttaagattaacgataagcacatcgaagtcatcgttcgtcagatg
ctgcgtaaagcaaccatcgtgagcgcaggaagtgcagacttcctggaaggtgagcaggct
gaattctctcgcatcaagatctctaaccgtgatctggaagcgaacggaaaagttggcgca
accttcatgcgtgacctgttgggtattaccaaagcgtcactggctaccgaatcgttcatc
tctgcagcatcgttccaggagacgacacgtgtcctgaccgaagcagcagttgcaggcaag
cgcgacgaactgcgcggcctgaaagagaacgtcatcgtgggtcgtctgattccggccggt
accggttatgcgtaccatcaggatcgtatgcgccgtaaagcggcaggtgaagtgccggtt
gcaccgcaggttactgcggatgaagcctcagccagcctggctgaactgttgaacgccggt
ctcggcggcaacaaaaacgattaa
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integrated database retrieval system
