Planococcus faecalis: AJGP001_05460
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Entry
AJGP001_05460 CDS
T04955
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
pfae
Planococcus faecalis
Pathway
pfae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AJGP001_05460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfae03400
]
AJGP001_05460
DNA repair and recombination proteins [BR:
pfae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AJGP001_05460
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AJGP001_05460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
RsgA_GTPase
AAA_21
nSTAND1
AAA_33
nSTAND3
AAA_22
AAA_25
AAA_23
Viral_helicase1
cobW
NACHT
DnaJ_CXXCXGXG
AAA_24
MMR_HSR1
Motif
Other DBs
NCBI-ProteinID:
AQU78755
LinkDB
All DBs
Position
1103779..1106661
Genome browser
AA seq
960 aa
AA seq
DB search
MRNQEIRIQGARANNLKNIDVVIPRDKLVVMTGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLGQMDKPDVDLIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYMRLMYARIGKP
ICPNHGIEISSQTIEQMVDRIVEYPERTKMQILAPIVSGRKGTHVKLLEDIKKQGYVRVR
VDGELIDLDDDIALDKNKKHNIEVVIDRIIIKEGIAPRLSDSLESALRLAEGRVLVDVME
QEELLFSEHHACPICGFSIGELEPRMFSFNSPFGACPECDGLGIKLEVDPELVIPDWTAT
LNKGAIVPWQPTSSQYYPQLLKAVCQHYKIDMDIPVSELPEEHINIILRGSGNDKIRFRY
ENDYGQIRDNHINFEGVLSNVDRRYRETSSDYIRDQMEKYMGQQSCTVCEGYRLKPESLS
VKVNGLHIGTVAEFSIVEANQFFDQLVLSEKDMQIAKLILREIQERIGFLINVGLDYLTL
SRASGTLSGGEAQRIRLATQIGSRLTGVLYILDEPSIGLHQRDNDRLIETLKSMRDIGNT
LIVVEHDEDTMLAADYLIDVGPGAGAHGGEIIAAGTPEKVMKNKKSLTGQYLSGKKFIPV
PAERRVPSDRKISIRGANQNNLKKVDVDIPLGLFTAVTGVSGSGKSTLINEILYKTLAHR
LNRAKAKPGHFDLIEGTEELEKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVYATTNEAK
VRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEICHGKRYNRETLEVKYKN
KSIADVLAMTVEDGYAFFENIPKINRKLKTIVDVGLGYIKLGQPATTLSGGEAQRVKLAS
ELHKRSNGKSFYILDEPTTGLHADDISRLLVVLQRLVENGDTVLTIEHNLDVIKTADYII
DLGPEGGDKGGMILATGTPEEIAAVENSYTGKYLKPVLERDRARMDAVVKGASRKKKTVK
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
ttgagaaatcaggaaatacgtatacaaggcgcgcgtgcaaataatctaaaaaacattgat
gtggtaattccacgtgacaagcttgtggttatgactggactgtcaggatccggtaaatct
tcgcttgcatttgatacgatttatgcggaaggacagcggcgatatgttgaatcgttgtct
gcttatgcacgccagtttttaggacaaatggataagcctgacgttgatttaattgaagga
ttgtcaccggctatttcgattgatcaaaagaccacgagtaaaaatccgcgttctacagta
gcgacagttacggaaatctatgattacatgcggctcatgtatgcacggattggtaagccg
atttgtccaaatcatggtatagaaatttcttctcaaaccattgaacaaatggtagatcgc
atcgtggaatacccggaacgtaccaaaatgcaaattttagctccaattgtttctggtcga
aaaggaactcacgtcaagttacttgaggacattaaaaagcaagggtatgtccgggtgcgc
gtggacggggaactaattgatctcgatgacgacattgcattagataaaaataaaaagcat
aacattgaagttgttattgatcgcatcatcattaaagagggcattgcgccacgtctaagt
gattctttagaatcagcccttcggctagcagaaggccgtgttttagtagatgtgatggag
caagaagaattgctgtttagtgagcatcatgcctgcccgatttgtggattttctattggt
gagcttgaaccgagaatgttttcgtttaactcaccttttggtgcatgtccagaatgcgac
ggtttagggataaagctagaagttgatcctgaattggtcattccagattggactgccacg
ttgaacaaaggagcaattgttccttggcaaccaaccagttcgcaatattatccgcaactt
ctaaaagcggtttgtcagcattataaaattgatatggacattccagtaagtgaattgcca
gaagagcatattaacattattttacgcggttctggaaacgataaaattcgtttccgttat
gaaaatgactatggtcaaattcgagacaatcacattaattttgaaggtgtcctttccaat
gtggaccgtcgttatcgtgagacatcttcagattatatccgtgaccaaatggaaaaatac
atgggtcagcaaagttgcacagtttgtgaaggctatcgtctaaagcctgaatcgctgtca
gtgaaagtaaatggtcttcatatcggaaccgtcgctgaattttcgattgtcgaagccaat
cagtttttcgatcagctcgtattgtcagaaaaagatatgcaaattgccaaactgatttta
cgggaaattcaagaacgcattggttttttgatcaatgttggactggattacttaacgtta
agtcgtgcatcgggaactttatccggaggagaggcgcagcgaatccgcctagcaactcaa
atcggatcaagacttaccggtgtactttatatactcgatgaaccgtccataggtcttcat
caacgagataatgatcgattgattgagactttgaaaagtatgcgagatattggcaatacc
ttaattgtcgtagagcacgacgaagatacgatgttagctgctgattatttgattgatgtt
ggaccgggagcaggagcgcatggtggagaaattattgctgcaggaacacctgaaaaagta
atgaaaaataaaaaatcattaacgggtcaatacttaagcggcaagaaatttattcccgtg
cctgctgagcgaagagtaccaagcgaccggaaaatctcaatccgcggtgcgaatcaaaac
aacttgaaaaaagtagatgtcgatattccactcggtttatttacagcagtgaccggggtt
tcaggatcaggtaaaagtacgctcattaacgaaattctgtacaaaacattggctcataga
ttgaatcgtgcgaaagccaaaccaggacattttgatctaattgaaggaactgaagaattg
gaaaaagttatcgatattgaccagtccccaattggtcggacgccacgttcaaacccagca
acctacacaggtgttttcgatgatatccgtgatgtttacgccacaacgaacgaagcaaaa
gttcgtggctacaaaaaaggccggtttagtttcaacgtcaagggcggtcgctgtgaagct
tgccgtggagatggtattataaaaatagaaatgcatttcttaccggatgtctatgtgccg
tgcgaaatttgccatggtaaacgttacaaccgggaaacattggaagtgaagtataaaaac
aaaagcattgcggatgttcttgcgatgacagtggaagatggctacgcattttttgaaaac
attccaaagatcaatcgcaagctaaagacgattgtcgatgtagggttgggatatattaag
cttggccaacctgcgactaccttatccggcggagaagcgcagcgcgttaagttagcatct
gagcttcacaaacgttcaaatggtaagtccttttacattctggacgaaccgactacaggt
ctgcatgcagatgatatttctcggttattggtcgttctgcagcggcttgtagaaaatggc
gatacagtactgactattgaacataatttagatgtcattaagacggcggattatattatt
gatttaggtcccgaaggtggagataaaggcggcatgatcttagctacaggtactcccgag
gaaatcgccgctgttgaaaattcttataccggaaagtacttgaaaccagtactggagcgc
gaccgggcacgtatggatgcagtcgtcaaaggtgcaagtcgcaagaaaaaaacagttaaa
tga
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