Pseudomonas synxantha LBUM223: VO64_0156
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Entry
VO64_0156 CDS
T03769
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfb
Pseudomonas synxantha LBUM223
Pathway
pfb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VO64_0156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfb03400
]
VO64_0156
Enzymes [BR:
pfb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VO64_0156
DNA repair and recombination proteins [BR:
pfb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
VO64_0156
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AKA80702
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Position
complement(187160..189658)
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AA seq
832 aa
AA seq
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MAKPLSEYNRKRDFEITAEPAGSSPATKRKTSALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPTQKRLAVHVEDHPLSYGSFEGSIPAGQYGAGDVIVWDRGLWQPHDDPHK
AYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDQQARPAVDYDIVQAQPD
SVLSDASVGKVKAASKTRKAAKPKKATSALPDQFSPQLATLVDRAPAGDWLYEIKFDGYR
MLARIRDGEVRLFTRNGNDWTERLPRQVKALEALKLKDSWLDGEVVSLNADGLPDFQALQ
NAFDIGRSLDIVYYLFDAPFLDGQDLRNVAVEERRAALKSALSGSRSKLLRFSEAFAANQ
RDIFESACDLALEGVIGKRAGSLYVSSRSADWIKLKCRLRQEFVIVGYTRPQGSRSGFGA
LLLAVNDDNGLVYAGRVGTGFDQAALKSIYAKLTALERKTSPLEKPLTSAQARGVHWVEP
TLVGEVQFTEWTREGVVRQAAFLGLRTDKPAAQIIHEQPRTAKFLEKPKKPKAKTTESGV
KVTHPERVIDTQSGTQKQQLAQFYAGISQWILPFLRSRPVSLLRAPEGIEGEQFFQKHSE
RMAIPHIKQLDQALDPGHARLMEIDSQDALVGAVQMGTVELHTWGATTDKIETPDLFVLD
LDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDGWDTVKAFAK
AMAQFMTQQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSR
DELKDLRGAQQWTVANLHERLQGLKEDPWAGYANRQKISKKMWDRLGAKPPQ
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcccctgagcgagtacaaccgcaaacgcgattttgagatcaccgccgaaccg
gccggcagttcaccagccacaaagcgcaaaacctcggccctgagttttgtaatccagaag
catgatgcgcgcaatctgcactatgactttcgcttggagctcgacggtgtgctgttgagc
tgggccgtgcccaagggcccgagcctggatccgacccagaagcgcctggcggtgcatgtc
gaggaccatcccctgagctacggcagtttcgagggcagcattcccgccggccaatacggc
gccggggatgtaatcgtgtgggaccgtggcttatggcaaccccatgacgatccgcacaag
gcctacgcagccggcaaactcaagttcactctggttggcgagaaactctcgggggactgg
gccctggtgcgcacccggctcaaaggcagcggtgacaaggagcaatggttgctgatcaag
gaaaaagaccagcaggcccgcccggcggtcgactacgatatcgtccaggcccagcccgac
agtgtgctcagcgacgcctcggtgggcaaagtcaaggccgccagcaaaaccaggaaagct
gcaaaacccaagaaagcaacctccgcccttccagaccagttctccccgcaactggcaacc
ctggtcgaccgcgcccctgctggcgactggctgtacgagatcaaattcgacggctaccgc
atgctggcacgtatccgcgacggtgaggtgcgcctgtttacccgcaacggcaacgattgg
accgagcgcttgccgcgccaggtgaaagcgttggaggcgctcaagctcaaggacagttgg
ctggacggtgaagtggtcagtctcaacgccgacggtctgccggatttccaggcgctgcag
aatgccttcgatattggccgcagcctggatatcgtctattacctgttcgatgcgcccttc
cttgatgggcaagacctgcgcaacgtggcggtagaagaacgccgggccgccctcaagtcg
gcgctttccggcagccgtagcaagctgctgcgcttctccgaagctttcgccgccaaccag
cgcgatatcttcgaaagtgcctgtgacctggccctcgaaggtgtgatcggcaagcgcgcc
ggcagcctctacgtatcaagccgcagcgccgactggatcaagctcaaatgccgcttgcgc
caggagttcgtgattgtcggctacacccgcccgcaaggttcgcgcagtgggtttggcgca
ctgttgctggcggtcaacgacgacaacgggctggtttacgccgggcgtgtaggcaccggc
tttgatcaggcggcgctgaagagcatctacgccaaactcaccgcccttgaacgcaaaacc
tcgccactggaaaagccactgaccagcgctcaggcccgaggcgtgcattgggttgagccg
acgctggtgggcgaagtgcaatttactgagtggacccgtgagggtgtggtgcgccaggcg
gcgtttctcggtttacgcacggataagcccgccgcacagatcatccatgaacaaccacgc
acggcaaaattcctggagaagcccaagaagcccaaggcaaaaaccaccgagagtggggtg
aaagtcacccaccccgagcgcgtcatcgacacacaaagcggcacgcagaaacagcaactg
gcacagttctatgccggcatcagccaatggatcttgccattcctgcgcagccggcccgtg
tcgctgctcagggcaccagaaggcattgagggcgaacagttctttcagaagcactccgag
cgcatggccattccccacatcaagcaacttgaccaggcgctggaccctggccacgcgcgc
ctgatggaaatcgacagccaggacgcgttggtcggcgctgtgcaaatgggcaccgtcgag
ttgcatacctggggcgccacgacggacaagattgaaacccccgacctgttcgtgctggac
ctcgacccggatccggccttgccgtggaaagccatgctggaggcggcacagttgaccttg
tcggtactcgatgaactgggtttgcaagccttcgtcaagaccagcggcggcaaaggcctg
cacctgattgtgccgctggcccggcgcgatggctgggacaccgtgaaagcattcgccaag
gcaatggcccagttcatgacccagcagctgccggagcgtttcaccgccaccagcggccca
aaaaaccgcgtgggcaagatctttatcgattacctgcgcaacgcccgcggcgccagtacc
gtggcagcttattccgtgcgggcgcggccgggcttgccggtgtcggtgccggtcagtcgg
gatgaattgaaagacttgcgtggcgcccagcagtggacggtggcgaacctgcacgagcgg
ctgcagggtctgaaggaggatccgtgggccggctacgccaatcgacagaagatcagcaaa
aagatgtgggacaggctgggcgcgaagccaccgcagtga
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