Pseudomonas fluorescens A506: PflA506_2574
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Entry
PflA506_2574 CDS
T02114
Symbol
ligD_1
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfc
Pseudomonas fluorescens A506
Pathway
pfc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PflA506_2574 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfc03400
]
PflA506_2574 (ligD_1)
Enzymes [BR:
pfc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PflA506_2574 (ligD_1)
DNA repair and recombination proteins [BR:
pfc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PflA506_2574 (ligD_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AFJ58339
LinkDB
All DBs
Position
complement(2829082..2831595)
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AA seq
837 aa
AA seq
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MAKPLSEYNRKRDFKITAEPAGSSPASKRNVSALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPSQKRLAVHVEDHPLSYGSFEGSIPAGQYGAGDVIVWDRGIWQPHDDPRK
AYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKENDQQARPASEFDIVQAEPA
SVLSDAVVGKPKAKAKPKAAPKAKTPKRIAALPDEFAPQLATLVDRAPEGDWRYEIKFDG
YRIMARIRDGEVRLFTRNGHDWTERLPRQCKALQALKLKDSWLDGEVVSLNGDGLPDFQA
LQNAFDIGRSLDIVYYLFDAPFLNGRDQREDPVEERRAALKSALSASRSKLLRFSEAFAA
SQRDIFESACDLALEGVIGKRAGSPYVSRRSADWIKLKCRLRQEFVIVGYTRPQGSRSGF
GALLLAVNDDTGLVYAGRVGTGFDQAALKSIYAKLTPLERKDSPLQKPLTSAQARGVHWV
EPSLVGEVQFAEWTREGVVRQAAFVGLRTDKPASQIIHEQPRAAKSVKAPETSKAGKAQA
TVKSVKITHPERIIDKHSSTQKQQLAQFYTDISEWILPFLRARAVSLLRAPEGIEGEQFF
QKHSERMAIPHIKQLDQALDPGHARLMEIDSVEALVGAVQMGTVEFHTWGATADKIETPD
LFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDGWDTV
KAFAKAIAQFMTRQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVS
VPVGREELKGLRGAQQWTVANLHQRLQTLKDDPWAGYANRQKISKKMWDKLGAQPPG
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcccctgagtgagtacaatcgcaagcgcgatttcaagatcaccgccgaaccc
gccggcagctcacccgccagcaaacgcaacgtctcggccctcagcttcgtgattcaaaag
cacgatgcgcgcaacctgcactacgactttcgcctggaactcgatggcgtgctgctgagc
tgggcggtgcccaagggcccaagcctggacccgagccaaaaacgcctggcggtgcatgtt
gaagaccacccactgagctatggcagtttcgagggcagcattcccgccggccaatacggt
gcgggggatgtgatcgtatgggaccgaggcatttggcagccccacgatgatccgcgcaaa
gcctacgcggcgggcaagctcaaattcaccctggtcggtgaaaaactctccggtgactgg
gcgctggtacgcacccggctcaagggcagcggcgacaaggagcaatggctgttgatcaag
gaaaacgatcagcaggcgcgcccggcctctgagttcgatatcgtccaggccgagcccgcc
agcgtgctcagcgatgcggtggtgggtaagccaaaggccaaggccaaacccaaggccgcg
ccaaaagccaaaacgcccaagcgcatcgctgccctgccggatgagtttgccccccaattg
gcaaccttggtggaccgggcgcccgaaggtgattggcgctacgagatcaagttcgacggc
taccgcatcatggcgcgcattcgcgacggcgaagtgcgcctgttcacccgtaacggccac
gactggaccgaacgcctgccacgtcagtgcaaagccttgcaagccctcaagctcaaggac
agttggctggatggcgaagtggtcagcctcaatggcgacgggctgccggatttccaggcg
ctgcaaaacgcgttcgatatcggccgcagcctggacattgtctattacctgttcgacgca
ccgtttttgaacggccgcgaccagcgtgaagacccggtcgaagagcgtcgggctgcgctt
aaatctgcgctgtccgccagccgaagcaaactgctgcgcttctccgaagcctttgccgcc
agccagcgcgatattttcgagagcgcctgtgacctggcgctcgaaggcgtgatcggcaag
cgcgccggcagcccctacgtgtcgcggcgcagtgccgactggatcaagctcaaatgccgc
ctgcgccaggagttcgtgattgtcggctatacccgcccccaaggttcgcgcagcggcttt
ggggcgctgctgttggcggtcaacgatgacaccggcctggtatatgccgggcgggtgggc
acgggctttgatcaagcggcgctgaaaagtatctatgccaagctcaccccgcttgagcgc
aaggactcgcccctgcaaaaaccattgaccagtgcccaggcccgtggcgtgcattgggtt
gagccgagcctggtcggcgaggtgcaatttgccgaatggacccgcgaaggcgtggtgcgc
caagccgcgtttgtgggcctgcgcaccgacaagccagcctcgcagatcattcatgaacag
ccgcgcgcggccaagtcggtcaaggcacccgaaacgtcgaaagccggtaaagcgcaggca
acggtgaagagcgtgaaaatcactcaccccgagcgcattatcgacaagcacagcagcacg
caaaaacagcagctcgcgcagttctacaccgatatcagcgaatggatcctgcccttcctg
cgcgcacgtgccgtgtcattgctgcgggcgcctgaagggatcgaaggtgagcagttcttc
cagaagcactcagagcgtatggccatcccccacatcaagcaattggaccaggcgctggac
ccaggccatgcgcgcctgatggaaatagacagcgtggaggccctggtcggcgcggtgcaa
atgggtaccgtcgaatttcacacctggggcgccactgcagacaagattgaaacgcctgac
ctgtttgttctcgatctcgacccggacccggccctgccctggaaagccatgctggaagcg
gcccaactgaccctgtcggtactcgatgagctgggcttgcaagctttcgtcaaaaccagc
ggcggcaagggcctgcacttgatcgtgccgttggcccggcgcgacggctgggacaccgtg
aaggcgttcgccaaagccattgcccaattcatgacccggcaactgcccgaacgctttacc
gccaccagtggccccaagaaccgcgtcggcaagatatttatcgattacctgcgcaacgcc
cgtggcgccagtaccgtagcggcgtattccgtgcgggcccgcccgggcctgccagtgtcg
gtgccggtgggtcgagaggagttgaaaggattgcgtggcgcccagcagtggacagtggcg
aacctgcatcagcggctgcaaacgttgaaggatgacccctgggcggggtatgccaatcga
cagaagatcagcaaaaaaatgtgggacaagctgggcgcgcaaccccctgggtga
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