Pseudomonas ogarae: PSF113_2698
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Entry
PSF113_2698 CDS
T01734
Symbol
ligD
Name
(GenBank) LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfe
Pseudomonas ogarae
Pathway
pfe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSF113_2698 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfe03400
]
PSF113_2698 (ligD)
Enzymes [BR:
pfe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSF113_2698 (ligD)
DNA repair and recombination proteins [BR:
pfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSF113_2698 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AEV62702
LinkDB
All DBs
Position
complement(3166871..3168838)
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AA seq
655 aa
AA seq
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MANAESESARLSNAESDATTPRKSPRDRLPERLSPQLATPVEEPPTGEWRYEVQFHGYRL
LTRIERGEVRVFNRNHQDWTERLKLHADALAGLNLGDSWLDGELVLLDDAGQSDFAALRQ
AFDISRTVDMVYFLFDAPFLNGVDLRQAPVEERRAALKKALGNNASQRLRFSESFSASQH
DMFESAIALSLDSVVGKRLGSPYISQRSADWVKLKCRLRQAFVIVGSTRPQGKRSGFGAL
LLAVNGPSGLVYAGRVGTGFSQAQIKQLHAQLCAQQRETSPLALPLNGVQERGVQWVEPD
QTCEVEFTEWSRDNQVRQAIFLGWPTNMPANKIVREQPLPIKPTTPEPKRRSKARAAKVD
GVTITHPDRVIDSVSGVQKAELAQYYLDIAPWILPHLKQRPVALLRAPDGIGEEQFFQKH
ADRLEIPHIKQLDPRLDPGHAALMEIDDIHALVSAAQMGTVELHTWTATHDRIETPDMFV
LDLDPDPSLPWSAMIEATHMTLAVLDELGLQAFLKTSGGKGMHVIVPLARSEGWDTTKAF
AKAISQFLTRQMPERITATMGPKNCVGKIFVDYLRNARGASTVAAYSVRARPGLPVSVPI
ARAELQTLRNAQQWDIYTALERAKGLGADPWEGYNHRQRITARMWAQLDAQKPEA
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgccgagagtgaatctgctcgtttgtccaacgccgagtcggacgcaacaacg
cctcgcaagtcccctcgagaccgtctgcccgagcgtctttcgccacagttggccacgccc
gtggaagaaccacccaccggcgaatggcgctacgaggtccaattccacggatatcggctg
ctgacccgcattgaacgtggcgaagtccgcgtgttcaatcgcaatcatcaggactggacc
gagcgactgaagctgcatgccgacgctctggccgggttgaacctgggggacagttggctc
gacggtgaactggttctactcgatgatgccggccagtccgatttcgcggccctgcgccag
gccttcgacatcagccgcaccgtcgacatggtgtatttcctgttcgatgcgccgttcctc
aatggtgtcgacctgcgccaggcgccggtggaggaacgccgtgcagccctgaaaaaagct
cttggcaacaatgcgagccagcgcctgcgcttttccgagtcgttttcggccagccagcac
gacatgttcgaaagcgctatcgcgctctccctggacagcgtggtcggcaagcgcctgggc
agcccttacatatctcagcgaagcgccgattgggtaaagctcaagtgccggttacgccaa
gccttcgtcatcgtcgggtccacccgcccccaaggcaagcgcagcggtttcggcgcgctg
ttgctggcggtcaacgggccatcagggttggtatacgccggtcgggtcggcacagggttc
agccaggcgcaaatcaaacaattacatgcgcaattgtgcgcgcagcagcgcgagacgtcg
ccactggctttgccactcaacggtgtgcaggagcgcggcgtgcaatgggtcgaacctgac
cagacctgcgaggtcgagttcactgaatggagccgcgataaccaggtgcggcaggctatt
ttcctgggctggccgaccaatatgccggccaacaagattgttcgcgaacagcccctgccg
ataaagcccacgacaccagaacccaagcgtcgcagcaaagcccgcgcggccaaggtcgac
ggcgtgacgatcacccaccccgatcgggtcatcgacagtgtcagcggcgtgcaaaaggct
gaactggcgcagtattacctggacatcgccccgtggatcctgccgcacctcaagcagcgg
ccggtcgcgttgctgcgggcaccggacggtatcggcgaagagcagttcttccaaaaacac
gccgatcgcctggagattccccacatcaagcagctggatcctcgcctggacccaggccat
gccgcgctaatggaaatcgatgacatccacgccctggtcagcgcggcgcagatgggcacg
gtggagctgcacacctggaccgcgacccacgaccgaatcgagacgcccgatatgtttgtc
ctggacctggacccggacccttcgctgccctggagcgccatgatcgaggcgacccacatg
accttggcggtgctcgacgagttgggtttgcaggcttttctcaagaccagcggtggcaaa
ggcatgcacgtgatcgtgccattggcgagaagtgaaggctgggacaccaccaaggcgttc
gccaaggccatctcgcagttcctgacccggcaaatgccagagcgcatcaccgccaccatg
gggccgaagaactgcgtcgggaaaatattcgtcgactacctgcgcaacgcccgcggcgcc
agcacagtggccgcctactcagtacgcgccaggccaggcctgccagtttcggtgccgatt
gcccgggccgaactgcagaccctgcgcaacgcccagcaatgggacatttataccgcgctg
gaacgggccaagggcttgggcgccgatccttgggaaggctacaaccaccgccagcggatc
acggccaggatgtgggcgcaactggatgcgcaaaaacccgaggcatga
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