Pseudomonas ogarae: PSF113_4741
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Entry
PSF113_4741 CDS
T01734
Symbol
rhlB
Name
(GenBank) RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pfe
Pseudomonas ogarae
Pathway
pfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSF113_4741 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfe03019
]
PSF113_4741 (rhlB)
Enzymes [BR:
pfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSF113_4741 (rhlB)
Messenger RNA biogenesis [BR:
pfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSF113_4741 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
AEV64730
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All DBs
Position
5517217..5518674
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AA seq
485 aa
AA seq
DB search
MLKALKKMFGKSEAEQLAPGSTAPTHGPSHTDAQQPRRAAPVAQATKEPVAQPVTAPAPE
KPRNEAPKPRRERAPKPPVVAWKLEDFVVAPQEGKTRFHDFKLAPELMHAIQDLGFPYCT
PIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPT
RELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFNQRG
DVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNLAKQW
TTDPSIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDEVRRI
EERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFT
LPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIEALLGKKINCETPPTHLLRPV
ERKRP
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcactcaagaagatgttcggtaaaagcgaggccgagcaactcgcgcctggc
tccacagcgccgacccacggcccgagccataccgatgcgcaacaaccgcgccgggcggca
cctgttgcacaggcaacaaaagaacccgtcgcccagcctgttacggcccccgcgcccgag
aaaccacgcaacgaagcccccaagccacgccgcgagcgcgcaccgaaaccgccggtcgtc
gcctggaagctcgaggacttcgtcgtagccccccaggaaggcaagacccgcttccacgac
ttcaagctcgccccggaactgatgcatgccatccaggacctgggtttcccgtattgcacg
ccaatccaggcgcaggtgctgggcttcaccctcgcgggcaaagacgccatcggtcgcgcc
cagaccggcaccggcaagaccgccgcatttctgatctccatcatcacccagttgctccag
accccgccgcccaaggaacgttacatgggcgagccacgggcgctgatcatcgcgccgacc
cgcgagctggtggtacagatcgccaaggatgccgccgacctgaccaagtacaccggcctg
aacgtcatgacgttcgtgggcggcatggacttcgacaagcagctcaagcacctcgaggcc
cgccactgcgacatcctggtcgccaccccgggccgcctgctggacttcaaccagcgcggc
gacgtgcacctggacatggtcgaagtgatggtgctggacgaagccgaccgcatgctcgac
atgggcttcatcccgcaagtgcgccagatcattcgccagaccccaccgaaaagcgaacgc
cagaccctgctgttctctgccaccttcaccgaagacgtgatgaacctggccaagcaatgg
accaccgatccgtccatcgtcgagatcgaagccgagaacgtcgccagcgaaaacgtcgag
cagcacatctatgccgtggccggtgccgacaagtacaagctgctctacaacctggtcaac
gacaacggttgggaacgggtgatggtgttcgccaaccgcaaggatgaagtgcggcgtatc
gaagaacgcctggtgcgcgatggcgtcaacgcggcccagctctcgggcgacgtgccccag
cacaagcgcatcaagaccctcgaaggtttccgtgaaggcaagatccgcgtactggtcgcc
accgacgtagccggtcgcggtatccacatcgacggcatcagccatgtgatcaacttcacg
ttgccggaagtaccggacgactacgtgcaccgtattggccgtaccggtcgtgccggggcc
gcgggggtttccatcagcttcgccggggaggacgactcctatcaattgccgtccatcgag
gcgttgctggggaaaaagatcaattgcgaaactccgccgacgcatctgttgcgaccggtc
gagcgcaagcgcccttag
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