KEGG   Plasmodium falciparum HB3: PFHG_01978
Entry
PFHG_01978        CDS       T01052                                 
Name
(Broad) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pfh  Plasmodium falciparum HB3
Pathway
pfh03030  DNA replication
pfh03410  Base excision repair
pfh03420  Nucleotide excision repair
pfh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pfh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PFHG_01978
   03410 Base excision repair
    PFHG_01978
   03420 Nucleotide excision repair
    PFHG_01978
   03430 Mismatch repair
    PFHG_01978
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pfh03032]
    PFHG_01978
   03400 DNA repair and recombination proteins [BR:pfh03400]
    PFHG_01978
Enzymes [BR:pfh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PFHG_01978
    6.5.1.6  DNA ligase (ATP or NAD+)
     PFHG_01978
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PFHG_01978
DNA replication proteins [BR:pfh03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    PFHG_01978
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     PFHG_01978
DNA repair and recombination proteins [BR:pfh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PFHG_01978
   NER (nucleotide excision repair)
    Other NER factors
     PFHG_01978
   MMR (mismatch excision repair)
    Other MMR factors
     PFHG_01978
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C ICE2
LinkDB
AA seq 912 aa
MNFLILVVLIKMVVCKIINYVRSDYNFMLSFLRTRKIFSHKKIYFNFKVSKNFTKNSSSN
SYSDILKCFSFPRKGTNDKTKENETFEKGEVKEEEEEKDKNVKRKIINESSKNKRAKVKN
ENDVIKKGSLFNCVVREDEKVNDLSSPKFNPVHFNINDLYLSEKDKEKHKFKDSLLFTFL
TNAFNQIEELKGSGTGSKKNVSIILSNIFRVLIYYSPNDLIPAVYITLNKVAPDYLNVEA
GVGEALILKTMSEAYSRTESSIKKDLQQIEDLGIIAENCSCKMRTIFPLPRLTIQSVFHE
LKSIPNLIGSNSQQKKREVIKKLLVSAKTSEAKYIVRFLQQRLRIGVNSATVVQALSYAF
ILTRPSIPDDIIKRGKEINENLINGKLDGTNNLINKSNNKTEEWLTQSGDRNCIKEENLN
DELLSKDDINKCENMDSLINEIRIRNEKINKPNIFYNLIEKVGDTRLLPLFFKELKNIYC
EENNDIDIFECMEKSVKSALCELPNIEIIIQNLLNGDDMNTLSKKCTVKTGIPVQPMLAK
PTKGVQEVLDRFNNVTFTCEYKYDGERAQIHYIDKDNIKIFSRNLETMTEKYPDVIQIIK
DQIGENVKECIIDSEVVAYDIVNNKILPFQVLTTRKRKDVDIENIKVKVCLFPFDLICCN
GIPVIKEPLAVRRKLLYSLLKSKDGVLSYATHSEMNNIEDIDMFLQDAIENNCEGLMVKT
LVENASYEPSRRSLNWLKVKKDYVEGLSDSVDLVPIAGYYGKGKRSGVYGAFVLAAYNSE
TENFQTVCKAGTGFSDEILSTLYETLSEKIIPNKKSYYEVSDKLNPDVWFDAHYVWEVKA
ADLSLSPVHTAAIGIYADDKGIGLRFPRFLRLREDKNAEQATTTQQIVDFYEAQFSSNKN
KNIDYNDDTESE
NT seq 2897 nt   +upstreamnt  +downstreamnt
atgaatttcctaatattagttgtattaattaagatggttgtatgtaaaattattaattat
gttagaagtgattataattttatgctgtcatttttaaggacgagaaaaatatttagtcat
aaaaagatttatttcaattttaaagtttctaagaattttacaaagaattcatcatctaat
agttatagtgatatattgtatgttttgcatcttacaaagaaattatatgatgaatatgta
tatatatatatatatatatatatgtgtatatatttttatttatgtagaaacctataattt
ctatatttttgtgcaaatttttatattttatttttacattttgtttattttttagaaaat
gtttctcttttccaagaaaaggaactaacgataagacgaaggaaaatgaaacatttgaaa
aaggagaagtaaaagaagaagaagaagaaaaagataaaaacgtcaaaaggaaaattatta
atgaaagtagtaaaaataaaagagctaaagttaagaatgaaaatgatgttataaaaaaag
ggtcgttatttaattgtgttgtaagagaagatgaaaaagtgaatgatttgagctcaccta
aatttaatcctgtacattttaatataaatgatttatatttatctgaaaaagataaagaaa
aacataaatttaaagactccttattatttacctttttaacaaatgcatttaatcaaatag
aagaattaaaaggtagtggtacaggaagtaaaaaaaatgtatctattatattatcgaata
tatttagggttttaatatattatagccctaatgacttaataccagctgtatatataacct
taaataaagtagctcccgattatttaaatgtcgaagctggtgtaggtgaagccttgatat
taaaaacgatgtctgaagcatatagtagaacggaaagtagtataaagaaggatttacaac
aaattgaagatttaggaataatagcggagaattgttcttgtaaaatgagaacaatatttc
cgttacctcgcttaactatacaatctgtttttcatgagctaaaaagtatacctaacctta
taggatcaaattcacaacagaagaaaagggaagtcataaagaaattgttagtaagtgcta
aaacatctgaagctaaatatattgtaagatttttacaacagcgtttaaggataggtgtaa
attctgcaacggtcgtacaagctttgtcatatgcctttatattaacaagacctagtatac
ctgatgatattataaaaagagggaaagaaattaatgagaatttgattaatggtaaattgg
atggtactaataatttaattaataaatctaataacaagacggaagagtggctaacccaat
caggtgataggaattgtataaaggaagaaaatttaaatgatgaattattatcaaaggatg
atataaataaatgtgaaaacatggattcattaattaatgagatacgtattcgaaatgaaa
aaataaacaaaccgaatattttttataaccttattgaaaaggtgggtgacacacgattat
taccattattttttaaagaattaaaaaatatatattgtgaagaaaataatgatattgata
tatttgaatgtatggaaaaatcagttaagagtgctttatgtgaattacccaatatcgaaa
taataatacaaaatttattaaatggtgatgatatgaataccttaagtaaaaaatgtactg
ttaaaacaggtattcccgttcaacctatgttagcaaaaccaactaagggtgttcaagaag
tgttggatagatttaataatgttacatttacttgtgaatataaatatgatggtgaacgag
cacaaatacattatatagataaagataatataaaaatattcagtcgaaatttagaaacga
tgactgaaaaatatccagatgttatacaaataataaaggatcaaataggagagaatgtaa
aggaatgtattatagatagtgaagttgttgcttatgatatagttaataataaaatattac
cattccaagtcttaactactagaaaaagaaaagatgtagatatagaaaatattaaagtga
aagtatgtctttttccatttgatttaatatgttgtaatggtataccagtaattaaagaac
ctttagctgttagaaggaaattattatattctttattaaagtcaaaagatggggtgttat
catatgctacccattctgaaatgaataatatcgaagatattgatatgttcttacaagatg
ctatcgaaaataattgtgaaggtttaatggttaagactttagtagaaaatgcatcctatg
aaccttctaggagatcattaaattggttaaaggtcaagaaagattatgttgaaggtcttt
cagattcggttgatttagttccgatagctggttattatgggaaaggaaaaagaagtggag
tatatggagcttttgttttagcagcttataattctgaaacggaaaattttcaaaccgttt
gtaaggcaggtacaggttttagtgatgagatattaagtacattatatgaaacattaagtg
aaaaaattataccaaataaaaaatcgtattacgaagtatctgacaaattaaatcctgatg
tgtggtttgatgctcactatgtatgggaggttaaggcagcagatttatctttgtcacctg
tacatacagcagctattggtatatatgcagatgataaaggtattggtttaaggtttcctc
gatttttacgtttaagagaagataaaaatgcagaacaagcaaccactacacaacaaattg
tagatttttatgaggcacaatttagtagtaataaaaataaaaatattgattataatgatg
atactgaaagtgaataa

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