Pandoraea fibrosis: PI93_003050
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Entry
PI93_003050 CDS
T06385
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfib
Pandoraea fibrosis
Pathway
pfib03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PI93_003050 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfib03400
]
PI93_003050 (ligD)
Enzymes [BR:
pfib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PI93_003050 (ligD)
DNA repair and recombination proteins [BR:
pfib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PI93_003050 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QHF11742
LinkDB
All DBs
Position
complement(692780..695275)
Genome browser
AA seq
831 aa
AA seq
DB search
MPKRNAKATSTTRRRQPDSALSAYDAKRNFTSTPEPLGKPATSGKALRYVIQRHDASHLH
YDFRLELDGTLKSWALPKQPSRDIRRPRLAVQVEDHPLAYADFEGDIPSGNYGAGHVDIW
DSGTWEPDGDARRDYASGKLSFTLHGERLGGRWTLIRTDKTARQPQWLMIHRQDETVVPT
TPDKSKTAWVTSRKSSVKPPVEMRPMLATLVESAPASQGWHAEIKLDGYRVLIRIAGADI
RVFTRSGQDWTHRFQPAVDALRKRGLPNAWLDGEAVVTNAHGLPDFQALQRAFDEDSPDA
ILIYVFDLPWCNGRDLRDRPLRERQAALSRLFEGRETGAVRVLEPVAGDIEALWHSACEA
GLEGVMVKRDDSPYVAGRSDAWRKLKCSQRQEFVVLGFTEPSGSRQGFGALLLGYYDDDG
KTLRYAGKVGTGFDTAGLLRLREQIDALETTRAPLSPAPRPGGRTRVHWLRPVLVAEVRF
AEWTRDGHVRQAAFLAMRRDKSAKDVRREARRAESASSTPHTETPPMPRAARSNDGTSAL
PVKITHGERIMDTYSGVTKAELAAYYHAVAAWMLPHLAGRPVAVLRAPEGIGGEMFFQKH
AAKTIQGVRALDPSLDPDHEPLMQIDNVRGLVGAVQMGTVEFHTWNARSDLIERPDRVIF
DLDPGKGVTFARIVEDARLIRAMLEELGLTAFVKTSGGKGLHIVTPLARRHTWEVAKGFA
EAVAKHMASVLPDRFTATMGPKHRVGKCFIDYLRNYRGATTVCAYAARAREGMAVSMPVR
WEELSDLPGADAWNVRNAVKRLNALKQDPWADYDKAAQQRVTKAMLDRLAP
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaacgcaatgccaaagccacatcgacaacgcgacgccggcaacccgacagcgcg
ctgagcgcctacgacgccaagcgaaatttcacgtcaaccccggagccgctcggcaagcct
gcgacatcgggcaaggcgcttcgatatgtcattcaacgtcacgacgcgagtcatcttcac
tacgatttccggcttgaactcgacggcacattgaagtcgtgggcgttgccgaagcagccg
agccgggacatccgccgcccacgcctcgccgttcaggtggaagaccacccactggcttac
gccgatttcgaaggcgacattccgtcgggaaactacggcgcgggacatgtcgatatctgg
gatagcggcacatgggagccggacggtgacgctcggcgcgattatgcaagcggcaaactg
tcgttcactttgcatggtgagcggctgggcggacgctggacgctcattcgcacggacaag
accgcacgtcagcctcagtggctgatgattcatcgacaggatgagacggtcgtgccgaca
accccggacaagtcgaagacagcgtgggtgacgtcgcgaaagtcgtcggtgaagccaccg
gtcgagatgcgcccgatgctcgccacgctggtcgagtctgcccccgcctcgcagggatgg
catgccgaaatcaagctcgatggctatcgcgttctcatccgcatcgcgggcgccgacatt
cgtgtctttacccgttccgggcaagactggacgcatcgctttcaacccgccgtcgatgcg
cttcgcaaacgtggtctgccaaatgcatggctcgacggcgaagctgtcgtgacgaatgcg
catggtctgcccgattttcaggcgttgcaacgcgcgttcgacgaagactcgccggacgcc
attctcatctatgttttcgacttgccctggtgcaacggccgcgatcttcgcgaccgaccg
ttgagagaacgccaagccgcactttcccgtcttttcgaaggacgcgagacaggtgccgtg
cgcgtgctcgagccggtcgccggggacatcgaggcgctttggcatagcgcctgcgaggcc
ggcctcgaaggcgtcatggtcaagcgtgacgactcgccttatgttgccggccgcagcgac
gcatggcgcaagctcaaatgctcgcaacgtcaggagtttgtcgtgctgggttttacggag
ccctccggctcgcggcagggtttcggggcgctattgctcggctattacgacgacgacggc
aagacacttcgctacgcaggcaaggtcggcacgggattcgataccgcgggactgctgcgc
ctgcgagaacaaatcgatgcgctagaaactacccgagcgccgctctcgcctgccccccgc
cccggaggccgaacccgcgtgcactggcttcgccccgtattggtggcggaagtgcgcttc
gccgagtggacgcgcgacggtcatgtacgccaggccgccttcctcgcgatgcgtcgggac
aagtctgcgaaggacgtccgacgcgaagcccgacgggcagagtccgcttcctccacccct
cacacggagacaccgcctatgccccgcgccgcccggtcgaatgatggaacgtctgcgtta
ccagtgaagatcactcacggcgaacgcatcatggacacctattcgggtgtgacgaaagcc
gagcttgcagcctactaccacgcggtcgctgcgtggatgcttccgcacctcgcaggacgg
cctgtggccgtgttgcgcgcacccgagggtatcgggggcgaaatgttctttcaaaagcac
gcggcgaagacgattcagggcgtgcgcgccctggacccatcgctcgatccggatcatgaa
ccgctcatgcagatcgataacgttcgcggcctcgtgggtgccgttcagatgggaacggta
gagttccatacgtggaatgcccgcagcgatctgatcgagcgccccgaccgtgtgatcttc
gatctggaccccggcaagggcgtgacgtttgcccgcatcgtcgaagatgcgcggttgatt
cgcgcaatgcttgaggaactgggactgacagcgttcgtcaagacgagcggcggcaagggg
ctgcacatcgtgacgcctttggcgcgacgtcacacgtgggaggtcgccaaggggtttgcc
gaagcggtggccaaacatatggcgagcgtgctcccggatcgattcacggcaacgatgggg
ccgaagcatcgcgtggggaagtgctttatcgactatctgcgcaattaccgtggggcgacg
acagtctgcgcatacgccgcccgagcccgcgagggtatggcggtgtcgatgccggttcgc
tgggaagagttgtccgatttacccggcgccgacgcatggaatgtgcgcaatgccgtcaaa
cggctgaacgcgttgaaacaagatccttgggccgactatgacaaggccgcacaacagcgg
gtgacgaaggcgatgctggatcggctggcgccgtga
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