Pseudomonas fitomaticsae: KJY40_12285
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Entry
KJY40_12285 CDS
T08740
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfit
Pseudomonas fitomaticsae
Pathway
pfit03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KJY40_12285 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfit03400
]
KJY40_12285 (ligD)
Enzymes [BR:
pfit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KJY40_12285 (ligD)
DNA repair and recombination proteins [BR:
pfit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KJY40_12285 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
UFQ02426
LinkDB
All DBs
Position
2701493..2704039
Genome browser
AA seq
848 aa
AA seq
DB search
MNRNLDDYNRMRDFCATSEPAAGKRPGKKSAGDHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDP
EKAYAKGKLKFELQGEKLAGVWNLVRTHMPGKKEQWFLIKHQDSAARPQSDYDVLVAEPD
SVLSERTIVDKPSLSAKQVKPLKASPKAPRKPASGKLAGAHKARIPAQLKPQLATLVESA
PEGDWQYEIKFDGYRIMARIDKDEVQLFTRNGHDWTHKLPKQAQALAALGLESAWLDGEM
VVADADGVPDFQALQNAFDSGRSENILYYLFDLPYLNGVDLREVPVQERRAALATVLKAH
EDPLLRFSEAFDETPQALLNSACQMRMEGLIGKRLGSPYVSRRSSDWIKLKCKHRQEFVI
VGYTDPKGARSSFGALLLGLHDRDSGELRYAGKVGTGFNETTLKSILAQLKPLRVKKPAV
VNPPTGFEAKGVHWLKPSLLAEVAFAEMTQDGSVRHAVFHGLRGDKPAKDITEERASPMK
TSKTESTAPSQAGLADGKVRITHPDRVIDASSGTTKMQLAEYYASVAEWILPQLKDRPVA
LVRAPDGIAGDLFFQKNAEHLAIPGIRTLDKDLTGQPVMLINNAEALIGAVQMSTVELHT
WNATTTDLDKPDRFVLDLDPDPALPWKSMVEATALTLTVLDELGLKAFLKTSGGKGIHLV
VPLTRKHGWDEVKDFSHAIVTHMAKLLPERFSAVSGPKNRVGRIFIDYLRNGLGATTICA
YAARTREGLPVSVPLFREEVSEIKGADQWNVGNVHERLAEVGDEPWKDMKKTRQSITAEM
RKRVGMKK
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgaacaggaatctcgacgactacaaccgaatgcgcgacttctgcgcaacctcggaaccg
gcggcgggcaaacgtccgggcaagaaatccgccggtgaccacgccctgcagttctgcatc
cagaagcacgatgcctctcacctgcattacgactttcgcctggagctcgacggcgcgctc
aagagctgggcggtgcccaagggcccgtcgctggatcccaaggtcaagcggctggcggtg
cacgtcgaggatcatccgctggattacgcgacgttcgaaggcagtattcccgaagggcat
tacggcgccggcgatgtgattgtctgggatcgcggcgtgtggattccgctggaagacccg
gagaaggcctatgccaagggcaagctcaaattcgaactgcaaggcgagaagctcgccggg
gtgtggaatctggtgcgcacccacatgccgggcaagaaagagcagtggtttctgatcaag
catcaggacagcgccgcgcgcccgcaaagcgattacgacgtgctggtcgccgagcccgac
agcgtgctcagcgagcgcacgatcgtcgacaaacccagcctcagcgcgaagcaggtcaag
ccgctgaaagcctcgccgaaagcaccgcgcaagccggcctcgggcaaacttgccggggcg
cacaaggccaggattcccgcgcaactcaaaccgcaactggccaccctggtggagagtgcg
ccggaaggcgattggcaatacgagatcaagttcgacggctatcggatcatggcgcgcatc
gataaggacgaagtgcagttgttcacccgcaatggccacgactggacgcacaagttgccg
aaacaggcgcaagccctcgcggcacttggcctggagtcggcgtggcttgacggtgagatg
gttgtcgccgacgcggacggcgtgccggactttcaggccctgcaaaatgcgttcgattcc
gggcgcagcgaaaacatcctctattacctgttcgatctgccgtatctgaacggtgtcgat
ctgcgtgaagtaccggtgcaggagcggcgcgcagcgctggccacggtgcttaaagcccat
gaagatccgctgttgcgtttttccgaagcgttcgacgaaaccccgcaggcgttgcttaac
agcgcctgtcagatgcgcatggaagggctgatcggtaaacgcctcggttcgccgtatgtg
tcgcgccgcagcagcgactggatcaagctcaagtgcaagcatcgccaggaattcgtgatc
gtcggctacaccgatccgaaaggcgcgcgcagttcgttcggcgcgttgctgctgggtctg
catgatcgtgacagcggcgagttgcgctacgccggcaaggtcggcaccgggttcaatgaa
accaccctcaagagcatcctcgcgcagctcaaaccgttgcgggtgaagaaaccggcggtg
gtcaacccgcccaccgggttcgaggccaagggtgtgcactggctcaagccgagtctgctg
gcggaagtggcgtttgccgaaatgacccaggacggctcggtgcgccacgccgtgttccat
ggcctgcgcggggacaaaccggccaaggacatcaccgaggagcgcgccagccccatgaag
acttcaaagaccgaatctaccgcgccgtcccaagccggcctggccgacggcaaggtgcgg
attactcatcccgaccgggtgatcgacgccagcagtggcaccaccaagatgcaactggcc
gagtattacgccagtgtcgccgaatggattctgccgcagctcaaggatcgcccggtggcg
ctggtgcgtgcgccggacggcatcgccggtgatctgttctttcagaagaacgccgaacac
ctggcgatccccggcatccgcacactcgacaaagacctgaccggccagccggtgatgctg
atcaacaacgccgaagccttgatcggcgcggtgcagatgagcacggtcgaactgcacacc
tggaacgccaccacgacagatctggacaagcccgaccgcttcgttctcgaccttgacccg
gatccggcgctgccctggaaaagcatggtcgaagccacggcgctgactctgaccgtgctc
gatgagctgggcctcaaggcgtttctcaagaccagcggcggcaagggcattcatctggtg
gtgccgctgacccgcaaacatggctgggacgaggtcaaggatttcagccacgccatcgtc
actcacatggcgaagttgttgccggagcgcttttctgcggtgtccgggccgaaaaatcgg
gtggggcggatcttcatcgattacctgcgcaacggtctgggcgccaccaccatttgtgcc
tatgcagcgcgtacccgcgaagggttgccggtgtcggtgccgctgtttcgggaagaagtc
agtgagatcaagggcgccgatcaatggaacgtgggcaatgtccacgaacggctggcggaa
gtgggcgatgagccctggaaggacatgaagaaaacccggcaaagcatcacggccgagatg
cgcaagcgggtgggcatgaagaaatga
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