Pseudocercospora fijiensis: MYCFIDRAFT_132548
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Entry
MYCFIDRAFT_132548 CDS
T03109
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pfj
Pseudocercospora fijiensis
Pathway
pfj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MYCFIDRAFT_132548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfj03400
]
MYCFIDRAFT_132548
Enzymes [BR:
pfj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MYCFIDRAFT_132548
DNA repair and recombination proteins [BR:
pfj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
MYCFIDRAFT_132548
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
LIG3_BRCT
RTT107_BRCT_5
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
19330817
NCBI-ProteinID:
XP_007923579
JGI:
132548
UniProt:
M2Z8X8
LinkDB
All DBs
Position
Unknown
AA seq
967 aa
AA seq
DB search
MYGRGTMTEQELDEKYPNRPHNHSRTLPFRDLFFTLFNPLNDNRKKPSGPAIARKKLGSY
GGPSQAPNEVRRQIIDRFISRWRKEVGDDIYPAMRLIVPEKDRDRGMYGLKEMTIAKLLV
KILKIDKNSDDGRNLTHWKQPGLNSTSAMAGDFAGRCFEVISKRPMRTTPGDMTIAEVNE
RLDRLAVAQKEENQLPILEQFYSRMNAEEMMWLVRMILRQMKVGATEKTFFEIWHPDAET
LFNISSSLRRVCWELYDPAVRLEGESRGICLMQCFQPQLAAFQMRSTEHMVAKMGTTDED
PVFWIEEKLDGERMQMHVMEDDDHPGGVRFGFWSRKAKDYTYLYGSGFEDDHSALTRHIK
DAFASGVRNIILDGEMITWDIQLDAIVTFGTLKTAAIEQQQNPFADGNRPLYRVFDCLYL
NDKDLTRYTLRDRRNALQCSIKNVRRRIEIHEYQEEKTASKVDETLRRVVAEASEGLVLK
NPRSLYHLNARNDDWIKVKPEYMTEFGESLDCIVVGGYYGSGKRGGGLSSFLCGLYVPSQ
KKEIQPDINPQKTLSFFKVGGGFSASDYAQIKHMTEGKWNDWDRKKPPFDWVELGGGMVK
QYERPDVWIKPEDSFVVSVKAASVGASDQFACGFTLRFPRFKKLRTDKSWQQALSHDDFI
ELKTKAQNEKEEKKMKMDESRRGRKTKKRKKEIVIQGQEEGDLKTPYAGPVTKVFEGLSF
FIMTEAPKPIKKSKAELEQLVKANGGQIVASHKDPKTILVADRNVVKVASVKKSDNRNIV
KPSWLLDCIKQSELDVGRPTLLLPLEPHHLEYTQSADQGKFDDNVDEYGDSYARDVTPSS
LLALCNKMPAKVEDGYEPLEILEQLNEQNNELDALAGFMFRGTKAYIEPSIPRESIRLYE
FAGGDLAKTLKDEDITQVVVQQGSQSLADIRKAVSSRSKLPRIVTEDWVKESWIEETRLD
EERFAPV
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgtatgggcgtggcacgatgacagaacaagaactcgacgagaagtatccaaatcgccct
cacaatcactcccgaactctgccatttcgcgatctcttcttcaccctgttcaaccctctc
aacgacaacagaaagaagccatccgggccagcaattgcccgtaagaagctgggctcttat
ggcggaccgagtcaagctccaaatgaagtgcgacgccagatcatcgacaggttcatcagt
cggtggcggaaggaagtcggcgacgacatctatcccgccatgcgtctcatcgttcccgaa
aaggaccgtgatcgaggcatgtatggactcaaagagatgaccatcgctaaacttctcgtc
aaaattctcaaaattgacaagaacagcgatgatggtcggaatctcacgcactggaaacag
ccgggcctgaattcgacgagtgccatggccggagactttgcaggccgctgttttgaggtc
atcagcaagcgacctatgcgcacaacacctggcgacatgaccattgctgaagtcaacgag
cgtcttgatcgtctggcggttgcacaaaaggaagaaaatcagctgccaattctcgagcag
ttttacagtcgcatgaacgccgaagaaatgatgtggctcgttcgcatgattcttcgtcag
atgaaggtcggtgcgacggaaaagaccttcttcgaaatctggcacccggatgcagagact
ctcttcaatatctcaagtagtctgagacgcgtctgctgggagctttatgatcctgcagtg
cgcttggagggcgagagtcgcgggatttgcttgatgcaatgcttccagccacagctcgct
gccttccagatgcgctcgaccgagcacatggtcgcgaaaatgggcacgacggacgaagat
cctgtgttctggattgaagaaaagcttgacggagaacgcatgcagatgcacgtgatggag
gacgatgaccacccgggcggtgtgcgcttcggcttctggtcgcgaaaggcgaaagattac
acttatctgtacggcagcggctttgaggacgaccactccgctttgacgcgacatatcaag
gacgcgttcgcgtcaggcgttcgtaacatcattcttgatggcgagatgatcacgtgggac
attcagctggatgctatagtcaccttcggcacgctgaaaacagccgccatcgagcagcag
cagaatcctttcgcagatggtaatcggcctctatacagagtattcgactgcctatatctc
aatgacaaagacctgacacgctacacccttcgcgatcgccgaaatgcgttgcaatgcagt
atcaagaatgtccgtcgtcggattgaaatccatgaatatcaagaagaaaagactgcatca
aaagtggacgaaactctacggcgagtcgtggcagaggcgagcgagggccttgtgctcaag
aatcctcgatcactgtatcatctgaatgcacgtaatgacgattggatcaaagtcaagcca
gagtacatgaccgagttcggcgaatcactcgattgcatcgtcgtgggaggctactatggc
tctggcaagcgcggtgggggtctgagcagctttttgtgcggactctatgtgcccagccaa
aagaaagagatccagccagatatcaaccctcaaaagacgctgtcattcttcaaagtcgga
ggaggcttcagcgccagcgattacgcgcagatcaaacacatgaccgaaggcaagtggaac
gactgggatcggaagaaacctccatttgactgggtcgaacttggcggaggcatggtcaag
cagtatgagagaccggatgtctggatcaagcccgaagactccttcgtcgtgagcgtgaaa
gccgcatcggttggggcctctgaccaattcgcttgcggcttcaccttacgctttccaagg
ttcaagaaattgcggactgacaagtcctggcagcaggcactgtcacacgacgacttcatt
gagctcaagaccaaagcacagaatgagaaggaggagaaaaagatgaagatggacgagtcg
cggagaggacgcaagacaaagaagcggaagaaggagatcgtgattcagggccaagaagaa
ggcgacctcaagacaccttacgccggtcctgtgacaaaagtcttcgaaggtctgagcttc
ttcatcatgactgaagccccgaagccgatcaagaagagcaaagccgagctcgaacaactt
gtcaaagcgaacggtggccagattgtggcatcacacaaggatcctaaaaccattcttgtt
gctgatcggaatgtagtcaaggtcgcctcggtgaaaaagagcgacaaccgaaacatcgtt
aagccaagctggctactcgattgcatcaagcagagcgaactagacgttggaagaccgact
ttgctcctccctctcgagccgcaccaccttgaatatacgcagtctgctgaccaaggcaag
ttcgatgacaacgttgacgagtatggtgacagctatgctcgcgatgtcacgccttccagc
ctcctcgctttgtgcaataaaatgccagccaaggttgaagacggatatgagcctctcgaa
atcctggaacaactcaatgagcagaacaacgagctcgatgccctcgctggattcatgttc
cgcggcacgaaagcatacatcgaaccaagtatacctcgagagagcataaggctgtatgag
ttcgctggtggtgacctcgccaagacattgaaagatgaggatatcacacaagttgtcgtt
cagcagggcagccagagccttgcggatattcgcaaagcagtctcttctagaagtaagcta
cctagaattgtgactgaggactgggtcaaagagagctggatcgaggagacgagactagac
gaggagcgttttgcacctgtctag
DBGET
integrated database retrieval system
