Pseudomonas frederiksbergensis: PFAS1_00235
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Entry
PFAS1_00235 CDS
T04786
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PFAS1_00235 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_00235 (ligD)
Enzymes [BR:
pfk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PFAS1_00235 (ligD)
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PFAS1_00235 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
APV37844
UniProt:
A0A1P8ENN1
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All DBs
Position
complement(49078..51669)
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AA seq
863 aa
AA seq
DB search
MSRSLDDYNRMRDFSATSEPAAGKRSGKKTAKDHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPIDYATFEGSIPEGHYGAGDVIVWDRGVWIPQDDP
AEAYAKGKLKFELKGEKLGGLWNLVRTHMPGKQEQWFLIKHQDGAARPESDYDVVAAEPD
SVLSDRTIVAKKPKTAAKPKPVKKPASPARNEKSAPLTGARKAKLPEMLKPQLATLVEKA
PGGEWSYEIKFDGYRIMARIDHDEVKLFTRNGHDWTHKLPRQAEALAALGLESAWLDGEM
VVANEQGVPDFQALQNAFDSGRSGNILYYLFDMPYLNGVDLREVPVEERRVALSTVLNPN
KDPLLRFSDSFSEEPQALLNSACQMQMEGLIGKRLGTPYVSRRSSDWIKLKCKHRQEFVV
VGFTDPKGSRNAFGALLLGLHDRDSGELRYAGKVGTGFNETTLKRIYEQLKPLQTKKIPV
VNPPSGFDAKGVHWLKPTLLAEVAFAEMTKEGSVRHSVFHGLRDDKPAEDITEERPKAVK
TSAAKKTTAEKPSTPAKKKAAPAPSQIGLGEGKVRITHPDRVIDASSGATKVQLAEYYAS
VAEWILPELKDRPVALVRAPDGIAGELFFQKNAERLAIPGITTLDKALTGQPVMIINNAE
ALIGAVQMSTVELHTWNATSDNLDKPDRFVLDLDPDPALPWKSMVEATQLTLSVLDELGL
KAFLKTSGGKGIHLVVPLTRKLGWDEVKDFSHAIVSHMAKLLPERFSAVSGPKNRVGRIF
IDYLRNGLGATTICAYAVRAREGLPVSVPIFREEVGELKGGNQWNIHTVHERLAEVGGEP
WKDLKKTRQSITAEMRRRVGMKK
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggagcctggacgattacaatcgcatgcgcgatttttcggcaacctctgaaccg
gctgccggcaaacgttcgggcaagaaaaccgcgaaagaccatgcgttgcagttctgcatc
cagaagcacgacgcctcgcgcctgcattacgactttcgcctggaactcgatggcgcgctg
aaaagctgggcggtgcccaaaggcccgtcactggaccccaaggtcaagcgcctggcggtg
cacgtcgaagaccatccgattgattacgccaccttcgagggcagcattcccgaagggcat
tatggtgccggcgacgtgattgtctgggaccggggagtctggattcctcaggacgatccg
gccgaggcatacgccaagggcaagctcaaattcgagctaaagggcgagaagcttggaggg
ctgtggaacctggtgcgcacgcacatgccaggcaagcaggagcaatggtttctgatcaag
catcaggatggcgcggccaggcccgaaagcgattacgacgtggtcgccgccgagcccgac
agcgtgctcagtgaccggaccatcgttgccaaaaagccgaagactgctgccaaacccaag
cccgtcaaaaaacctgccagcccggcgcgcaacgaaaaatcggctcccttgacgggcgcc
cgcaaagccaaattgccggagatgctcaagccgcaactggcgacgctggtcgaaaaggcc
ccgggcggcgagtggagctatgagatcaagttcgatggctatcggatcatggcccgcatc
gaccacgacgaggtcaaactgttcacccgcaacggccacgactggacccataaactgccc
aggcaagccgaggcgttggcggcgctgggtctcgaatcggcctggctcgacggggaaatg
gtggtcgccaacgagcagggtgtgccggatttccaggccttgcaaaacgccttcgactcg
ggccgcagcggcaacatcctctattacctgttcgacatgccttacctcaacggtgtggac
ctgcgcgaggtgccggtcgaggagcgaagggttgcactgtcgaccgtgctcaaccccaat
aaagatccgctgctgcgcttctccgattcctttagcgaagaaccgcaagcgttgctcaac
agcgcctgccaaatgcagatggaagggctgatcggcaaacgcctgggcacgccttacgtg
tcgcggcgcagcagcgactggatcaagctcaagtgcaagcatcgacaggaatttgtggtg
gtcggcttcaccgatccgaaaggctcgcgcaatgccttcggtgcgctgctgctggggttg
catgaccgcgatagcggtgagttgcgttacgcggggaaggtcggcaccgggtttaacgag
acgacgctcaagcgcatttatgagcaactgaaaccgttgcagacgaaaaagatcccagtg
gtcaatccgccgagcggttttgacgccaagggtgtgcactggctcaagccgacactgctg
gcggaggtcgcttttgccgaaatgaccaaagaaggttcagtccgtcattcggtgttccat
ggtctgcgtgacgacaaacctgccgaagacattaccgaggagcgtccgaaagccgtgaag
acttcagccgcgaaaaagaccactgccgaaaaaccttccacccctgccaaaaagaaagcc
gcgcccgcaccctcacaaatcggcctgggcgagggcaaggtgcgcatcactcaccccgac
cgggtgatcgacgccagcagcggcgccactaaagtgcaactggcggagtattacgccagc
gtcgccgagtggattttgcctgaactcaaggatcgccccgtggcgttggtgcgtgcgccg
gacggcattgccggcgaactgtttttccagaagaacgccgagcgcctggccattccggga
attaccactctggacaaggcactcaccgggcaaccggtgatgatcatcaacaacgccgaa
gccctgatcggcgccgtgcagatgagcactgttgagttgcacacctggaacgccacctcg
gacaacctcgacaaacccgaccgcttcgtcctcgacctcgacccggacccggcgctgccc
tggaaaagcatggtcgaggcgactcaactgaccctctcggtgctcgatgaactggggctc
aaggcgtttctcaagaccagcggcggcaagggcattcacttggtggtgccactgacgcgc
aagctgggttgggatgaggtgaaagacttcagccacgcaatcgtcagccacatggccaag
ttgctgccggagcgtttttccgcggtgtcgggcccaaagaaccgggtcgggcggatcttc
atcgattacctgcgcaatggcctcggggccacgaccatctgcgcttacgccgtgcgcgcc
cgcgaagggctgccggtgtcggtgccgatctttcgcgaagaggtgggcgagctcaagggg
ggcaatcagtggaacatccacacagtgcatgaacgcttggccgaggtcggcggtgagccc
tggaaggatttgaagaaaacccggcaatcgatcaccgccgagatgcggcggcgggtcggg
atgaaaaaatag
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