Pseudomonas frederiksbergensis: PFAS1_08885
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Entry
PFAS1_08885 CDS
T04786
Name
(GenBank) type IV secretion protein Rhs
Organism
pfk
Pseudomonas frederiksbergensis
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
DUF4595
CarboxypepD_reg
TcdB_toxin_midN
OCRE
Motif
Other DBs
NCBI-ProteinID:
APV39455
UniProt:
A0A1P8ET98
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All DBs
Position
complement(1902106..1906869)
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AA seq
1587 aa
AA seq
DB search
MDQIVRIEQELDGFKDTLSLYRQQLGGFLSRNADKVSRATDMPSLMDMERLIKLGNTTTA
VSSRDDDFFSSLAQCPKSGILEIESKFESVYDIPLGNIQVDVIASDGGKSTPVTLDKNGK
GQFEGTPGKFYRVHVRSEVTAKQIDALFSSYDGLTQELEVWLRKEWEGFKPQWSQQSASA
SLAAVGNGMLAGSWAAVEAVWDGIGELADILKDPNAFAEKLGESAGQLAGLAVTAPDLME
KAMLLASDEAALCLLMRTAVLWLEALPPSQLAGSSAEAISRVVVGLVIDLLIGLVLSVVG
VGVAWLAMRLKKYSAQIYEAAMGFVKSMVTIINNFMAYVDRYKTVAARGVAAGLKQGRMQ
LRWNGRKNTTLKKDEHHDNAPDQAKNPNGDSADSVDKTATNKCPVSMVTGEELLTLTDGT
LDGILPFEFTRLYRTSAVEIDCGLGFGWSHSLSHRLEIEGDSVIWIDHENRRTTFPLPNI
ERPAIHNSLSRAAIYLGDEPEELILAQAGDDARFYHFHNGRLTAISDVYDNRLRITRDRQ
DRIKHLDNGAGRALRLRYDRSHLVAIDYQRFQPADTLEDAWRTEQTLVAYRYDARHRLIE
ATNAAGESERYDYDDQHVILQRQLAGGASFFWEWERSGKAARCIRHWASFSQMDARYVWD
DNGSVRVKNADGSEEVYEHDERARLVRKVGLDGGEHLKAYDDHGRLLAEQDPLGAVTEYR
YDEVGRLIALIPPEDEPTAYEYRNGFLHARYRGKAVWKYQRNAQGDITEATDPDGQVSHY
YYDDKGQLLSIRYPDTSRHVFVWNALGQLLEETLPDGGQRRFSYDALGRQITRQDEHGAV
TQYHWDAVGRLIQTTLPTGASRAFSYNAYGKITAERDELGRVTRYEYLDDLHLVSRRLNP
DGTQLRYRYDNAQLLLTAIENESGETYRLDYTPNGLIRQETGFDGQRTAYAYDLNGQLLK
KTEFGDDGSQLMTAYQRDSAGRLRVKTLPDGIKVEYRYDRLGRLLSVDDGHDHPLEFEYD
PQDRLITEHQGWGTLRYGYDACGQLNRLRLPDGSKLDYHHARGGALTAIDLNGARLSEHQ
FAFGREQQRQQGQLLSEYAYDDQGRLKAHAVSQQHQALYRRDYAYSANGNLDYIADTRHG
QRSYHYDPLNRLIRVRHTRDQPPESFAHDPAGNLLMHDRPGPSTVKGNRLLIQGDRHYDY
DAYGNLIRERRGTGQKRVTEYRYDGQHRLVGVTTPDGRSASYRYDAFGRRISKTVDGKTT
EFFWQGDHLIAESSREHYRSYVYEPGTFRPLAMLDGKGPDQACPFYYQLDHLGTPQELTD
YSGDIVWSATYNAYGQVTRLAFGGGEQLEQPLRFQGQYFDAESGLHYNRHRYYDPEVGRY
LTPDPIKLAGGLNQYQYTPNPTGWVDPLGLSGSCPPPNKLGCGAPDDTTGARVDEGEPAL
PKPKLSAAELAKKEVKRLNDSQGMHMVGKHSPAVPDAKWKQRAIDGTDPITGRRPRHQRG
NPSSRFSSWELMLEAYTLATTRTERGLSRFTGKDGEDNNIVRMRLPGAGEGYIPNTRSKE
NPRLIKLDGFEMKFDDAGVPFTLYPIK
NT seq
4764 nt
NT seq
+upstream
nt +downstream
nt
atggatcagatcgtacggatcgagcaggaactcgacggttttaaagacaccttgagtctg
tatcgccaacaacttggtggcttcttaagcaggaatgcggacaaagtcagccgagctacg
gacatgccctcgctgatggacatggagcggctcataaaactgggtaataccaccaccgcg
gtgagcagtcgtgatgacgattttttctccagtcttgcgcagtgccccaagagcgggatt
ctggagatcgagagcaagttcgagtcggtttacgacattccgctggggaatattcaggtc
gatgtgattgcctctgatggcggcaagtcgacgcctgtaacactcgataaaaacggtaaa
gggcagttcgaaggcactcccggcaagttctatcgcgttcatgttcggagcgaagtcact
gcgaaacaaattgatgcgcttttctcctcttacgacggcctgacccaagagctggaagtc
tggctgcgcaaagagtgggaagggtttaagccgcaatggtcgcagcaatcggcatcagct
tcactggcggcggtgggcaatggaatgctcgcggggagctgggcggcggtcgaggctgtt
tgggatggcatcggtgaacttgccgacatcctgaaagaccccaacgcttttgccgagaag
cttggcgaaagtgctgggcaacttgccggtctggccgtaaccgcccccgacctgatggaa
aaagccatgttgctggccagcgacgaggcggcgctgtgtttgttgatgcgtaccgcagtg
ctatggcttgaagcattgccaccttcgcaacttgccgggtcctcagcggaagccatttcc
agggtcgtggttggcttggtcatcgatttgttgattggcctggtgctgagcgtggttggg
gtgggtgttgcctggctcgcgatgcgattaaagaagtacagcgcgcagatttatgaggcc
gcgatgggcttcgtgaagtcgatggtcacgatcatcaacaacttcatggcttacgttgat
cgctataaaacagttgccgcacggggtgtggcggcggggctcaaacaaggtcggatgcaa
ctgcgctggaatggccgcaagaacaccacgctgaaaaaagacgaacaccacgacaacgcc
ccggatcaggcgaaaaaccccaatggcgacagcgccgattccgttgataaaaccgccacc
aacaaatgcccggtgtcgatggtcaccggcgaagaactgctgaccctgaccgacggtacg
ctggacgggattttgccgttcgagttcacccggctctatcgcaccagtgcggtggagatc
gattgcgggctcgggttcggctggagtcattcgctgtcgcatcgactggaaatcgagggc
gacagcgttatctggatcgaccacgaaaaccgccgtaccacctttccgttaccgaatatc
gagcgcccggcgattcacaacagcctgtcgcgggcggcgatttatctgggtgacgagccg
gaagaactgatcctcgcccaggccggtgacgacgcacggttctatcactttcataacggt
cggttgacggcgatcagcgacgtctacgacaaccgcctgcgcatcacccgcgaccggcaa
gaccgcatcaagcatctcgacaacggcgctggccgtgccttgcgattgcgctatgaccgc
agccatttggtcgccatcgactatcagcgttttcagcccgccgacaccctggaagacgcc
tggcgtaccgagcaaacactggttgcctaccgctacgacgctcgtcatcgcttgatcgaa
gccaccaatgccgccggcgaaagcgagcgctacgactacgacgatcagcacgtcatcctg
cagcggcagttggccggtggggcgagtttcttctgggagtgggaacgctccggcaaggcg
gcccgctgcatccggcattgggcgtcgttttcgcagatggacgcgcggtatgtctgggat
gacaacggcagtgtgcgggttaaaaacgccgacggtagcgaagaggtttacgagcacgac
gagcgcgcgcggctggtgcgcaaggtcgggctggacggcggcgaacacctcaaggcctac
gacgaccacggtcggctgctggccgagcaggacccgcttggcgccgtcaccgaataccgt
tacgacgaagtcggacggctgatcgcgctgattccgccggaagacgagccgacagcctac
gagtatcgcaacggtttcctgcacgcgcggtatcgcggcaaagcggtgtggaaatatcag
cgcaatgcgcaaggcgacatcaccgaagcgaccgaccccgacggccaggtcagccactat
tactacgacgacaaagggcaactgctgtcgatccgctacccggacaccagccggcatgtg
ttcgtctggaacgccttggggcaactgctcgaagagaccttgccggacggcggtcagcgg
cgcttttcctacgatgcgttggggcggcagattacccgtcaggatgaacacggtgccgtt
acccagtaccactgggatgccgttggccgactgatccagaccacgctgcctaccggcgcc
agtcgcgccttcagctacaacgcctacggcaagatcaccgccgagcgcgatgaactgggc
cgcgtcacccgctacgaatacctcgacgacctgcacctggtcagccgccgcctcaatccc
gacggcacccagctgcgctaccgctacgacaacgcccagctgttgctcacggcaatcgaa
aacgaatccggcgaaacctatcgcctggactacacgcccaacggcttgatccgacaggaa
accggcttcgacggccaacgcacggcgtacgcctacgacctcaatggccagttgctgaag
aaaaccgagttcggcgatgacggctcgcagctaatgaccgcttaccagcgggattcggcc
ggacgcctgcgggtcaaaaccctgcccgacggcatcaaggttgaataccgctatgaccgc
ctcggccgactgctcagcgtcgacgacggccacgaccatccgctggaattcgagtacgac
ccgcaggatcggctgatcaccgagcatcagggctggggcacgctgcgttatggctacgac
gcctgcggccagctcaatcgcctgcgcctgccggacggcagcaaactcgattaccaccac
gcccggggtggcgcgctgacggcgatcgacctcaacggcgcgcggctcagcgagcaccaa
ttcgccttcggccgcgaacagcaacgccagcaggggcagttgctcagcgaatatgcctac
gacgatcagggccggttgaaggcccacgcggtcagccaacagcaccaagcgctgtatcgc
cgcgactatgcctacagcgccaacggcaacctcgactacattgccgacacccgtcacggc
caacgcagttaccactacgacccgctcaaccgcctgatccgcgtccgccacacccgcgat
caacccccggaaagcttcgcccacgacccggccggcaacctgctgatgcacgatcgtccc
ggcccgtccaccgtcaaaggcaaccgcctgctgatccaaggcgaccgccactacgactac
gatgcctacggcaacctgatccgcgaacgccgcggcaccgggcaaaaacgcgtcaccgaa
taccgctacgacggccagcaccgcttggttggcgtcaccaccccggacggccgcagcgcc
agctaccgctacgacgccttcggccgccgcatcagcaaaaccgtcgacggcaagaccacc
gaattcttctggcaaggcgaccacctcatcgccgaaagcagccgcgagcactaccgcagc
tacgtctacgaacccggcacattccgcccgctcgccatgctcgacggcaaaggcccggac
caggcttgccccttttattaccaactcgaccaccttggcacaccgcaagaactcaccgat
tacagcggcgacatcgtctggtcggcgacgtacaacgcctacggccaagtcactcgcctg
gcgttcggtggaggagaacaactcgagcagccgttgcgctttcaagggcagtacttcgat
gccgagagtggtctgcattacaaccggcatcggtactatgatccggaggtgggtcggtac
ctgacgcccgatccgatcaagttggcgggtgggctgaaccagtaccagtacacgccgaat
ccgacgggatgggttgatccgttggggttgagcgggagttgtccgccgcctaataagctt
gggtgtggggcgccggatgatacgactggcgctagggtggatgagggtgagccggcgctg
ccgaagcccaagctgagtgctgcggagcttgccaagaaagaagttaaaagattaaacgac
agtcaaggcatgcatatggttggaaaacatagtccagcggtaccagatgctaagtggaag
cagcgtgctattgatggtacggatccgataactggtagaagacctaggcaccaacgtggt
aatccaagttccagatttagcagttgggagttgatgctcgaggcttacactcttgcaaca
acgaggactgagcgagggctgtctcgatttacggggaaggacggagaggataataacatc
gttagaatgaggcttccgggtgccggggagggatatataccaaacactaggtcaaaggaa
aatccaaggcttattaaattggacggttttgaaatgaagtttgatgatgctggcgttcct
tttacgttatatccgatcaagtga
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integrated database retrieval system
