Pseudomonas protegens Pf-5: PFL_0185
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Entry
PFL_0185 CDS
T00249
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl00250
Alanine, aspartate and glutamate metabolism
pfl00310
Lysine degradation
pfl00350
Tyrosine metabolism
pfl00650
Butanoate metabolism
pfl00760
Nicotinate and nicotinamide metabolism
pfl01100
Metabolic pathways
pfl01120
Microbial metabolism in diverse environments
Module
pfl_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
PFL_0185 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
PFL_0185 (gabD)
00310 Lysine degradation
PFL_0185 (gabD)
00350 Tyrosine metabolism
PFL_0185 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
PFL_0185 (gabD)
Enzymes [BR:
pfl01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
PFL_0185 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
PFL_0185 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
PFL_0185 (gabD)
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Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
AAY95596
UniProt:
Q4KKA2
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Position
219230..220672
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AA seq
480 aa
AA seq
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MQLKDAQLFRQQAFIDGAWVDADNGQTIKVNNPATGEILGTVPKMGAAETRRAIEAADKA
LPAWRALTAKERATKLRRWYELLIENQDDLGRLMTLEQGKPLAEAKGEIAYAASFIEWFA
EEAKRIYGDVIPGHQPDKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVIK
PASQTPFSALALVELAHRAGIPKGVLSVVTGSAGDIGGELTSNPIVRKLSFTGSTEIGRQ
LMAECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRLYIQDS
VYDAFAEKLKAAVAKLKIGNGLEEGTTTGPLIDEKAVAKVQEHIADALKKGATLLAGGKS
MEGNFFEPTILVNVPKDAAVAKEETFGPLAPLFRFKDEAEVIAMSNDTEFGLASYFYARD
LGRVFRVAEALEYGMVGVNTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCLGI
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcaaagacgcccagttgttccgccaacaagccttcatcgatggagcttgggtc
gacgcggacaacggccagacgatcaaggtcaacaaccccgctaccggtgaaatcctcggt
accgtacccaagatgggcgccgccgaaacccgccgcgccatcgaggccgccgacaaggcc
ctgccggcctggcgtgccctgaccgccaaggagcgcgccaccaagctgcgccgctggtat
gaattgctgatcgagaaccaggacgacctgggtcgcctgatgaccctggagcagggcaag
ccgctggccgaagccaagggcgaaatcgcctacgccgcctccttcatcgaatggttcgcc
gaagaagccaagcgcatctacggtgacgtgattcccggccaccagcccgacaagcgcctg
atcgtgatcaagcagccgatcggcgtgaccgcggccatcaccccgtggaacttcccggcg
gcgatgatcacccgtaaagccggcccggccctggccgccggttgcaccatggtcatcaag
cccgcttcgcaaaccccgttctcggccctggccctggtggaactggcgcaccgtgccggc
atcccgaaaggcgtgctgagcgtggtcaccggcagcgccggcgacatcggcggcgagctc
accagcaacccgatcgtgcgcaagctgtcgttcaccggctctaccgagatcggtcgccag
ctgatggccgaatgcgccaaggacatcaagaaagtctccctggagctgggcggcaacgcg
ccgttcatcgtgttcgacgacgcggacctggataaggccgtcgaaggcgcgatcatctcc
aagtaccgcaacaacggccagacctgcgtctgcgccaaccgcctgtacatccaggactcg
gtctacgacgccttcgccgagaaattgaaggcagcagtggccaagctgaagatcggcaac
ggcctggaagaaggcaccaccactggcccgctgatcgacgaaaaagccgtggccaaggtc
caggaacacatcgccgacgccctgaaaaaaggcgcgaccctgctggccggcggcaagtcc
atggaaggcaacttcttcgagccgaccatcctggtcaacgtgcccaaggatgcagccgtg
gccaaggaagaaacctttggcccactggcgccgctgttccgcttcaaagacgaagccgaa
gtcatcgccatgtccaacgacaccgaattcggcctggcctcgtacttctatgcccgcgac
ctgggccgtgtgttccgtgtggccgaggccctggaatacggcatggtcggggtcaacacc
ggcctgatctccaacgaagtggcgccgttcggcggcatcaaggcctcgggcctgggccgt
gaaggttccaagtacgggatcgaggattacctggaaatcaaatacctctgcctgggtatc
tga
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