Pseudomonas protegens Pf-5: PFL_5059
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Entry
PFL_5059 CDS
T00249
Symbol
ddlB
Name
(GenBank) D-alanine--D-alanine ligase B
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl00470
D-Amino acid metabolism
pfl00550
Peptidoglycan biosynthesis
pfl01100
Metabolic pathways
pfl01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PFL_5059 (ddlB)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PFL_5059 (ddlB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
PFL_5059 (ddlB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pfl01011
]
PFL_5059 (ddlB)
Enzymes [BR:
pfl01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
PFL_5059 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:
pfl01011
]
Precursor biosynthesis
Amino acid ligase
PFL_5059 (ddlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
CPSase_L_D2
ATP-grasp_4
ATP-grasp
ATP-grasp_3
RimK
GARS_A
ATP-grasp_5
ATPgrasp_YheCD
TTL
Motif
Other DBs
NCBI-ProteinID:
AAY94287
UniProt:
Q4K6J5
LinkDB
All DBs
Position
complement(5820200..5821156)
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AA seq
318 aa
AA seq
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MTAAYANLFSTVKPSDFGRVAVLYGGKSAEREVSLKSGKAVLEALQSGGVNAFGIDVGDD
LLQRLLSEKIDRAFIILHGRGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWH
SLGIPTPRHAVLSSEADCISAVAELGLPLIVKPAHEGSSIGMAKVTSASELIDAWKAAST
YDSQVLVEQWIQGPEFTIATLRDQVLPPIALGTPHTFYDYDAKYLASDTQYRIPCGLDSS
KEQELMELTAKACEALGIAGWARADVMQDAQGQFWFLEVNTAPGMTDHSLVPMAARAAGL
DFQQLVLAILAASLEARG
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctgcctacgccaacctgttctctaccgtgaaaccgagcgatttcggtcgcgtc
gccgttctttacggtggcaagagcgccgagcgcgaagtgtcgctcaagtccggcaaggcc
gtgcttgaagcgctgcagagcggcggtgtgaacgccttcggcatcgacgtcggcgatgat
ctgctgcaacgtctcttgagcgagaagatcgatcgtgccttcatcattctccacggtcgt
ggcggtgaagacggcagcatgcaagggctgctggagtgcctggggattccttacaccggc
agcggcatcctcgcttcggccctggccatggacaaactgcgtaccaagcaggtctggcac
agcctgggcattccgacgccgcgccacgccgtattgagctccgaggccgattgtatttcc
gcggtggcggaactgggcctgcctttgatcgtcaaaccggctcatgaaggctccagtatc
ggtatggccaaggtgacttccgcgtccgaattgatcgacgcatggaaggcggccagtacc
tacgattcgcaagtgttggtcgagcaatggatccagggtccggagttcaccatcgcgacc
ctgcgtgaccaggtgctgccacccatcgccctgggcactccccacacattttacgactac
gacgccaagtacctggcttccgatacccagtaccggatcccgtgcgggctcgacagctcc
aaggaacaggaactcatggaactcacggcgaaagcctgtgaggcgcttggtatcgccggt
tgggcacgtgccgacgtgatgcaggacgcccaggggcagttctggttcctggaagtgaac
accgctccgggcatgaccgatcacagtctggttccgatggcggcccgcgcggccggcctg
gatttccagcaactggtattggccatcctggcagccagtcttgaggcgagaggttaa
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