Phytohabitans flavus: Pflav_075310
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Entry
Pflav_075310 CDS
T06516
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfla
Phytohabitans flavus
Pathway
pfla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Pflav_075310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfla03400
]
Pflav_075310
Enzymes [BR:
pfla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Pflav_075310
DNA repair and recombination proteins [BR:
pfla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Pflav_075310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
BCB81121
UniProt:
A0A6F8Y589
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All DBs
Position
8034628..8035524
Genome browser
AA seq
298 aa
AA seq
DB search
MPKEQRIRVEVDGQSLELSNLDKVLYPAAGFTKGEIINYYTRIAPALLPHLRGRALTRIR
FPNGVNGQSFFEKNKPGGTPDWVRVETMPVPGSSKDRETIDYVVADDLPTLVWLANLAAL
ELHTPQWRIGEQPDLMVVDLDPGAPAGLRECCTVAVLMRDRLAEDGLTAYPKTSGKKGMQ
LSCPIAGTQSAEEVSAYAKRIAEELERSTPKSVTSKMMKRLRPGKVFIDWSQNSAAKTTV
APYSLRAQPTPTVSTPLTWEEVEQGGARAFAPEEVLERVEEYGDLLEDLLTPGPSLPS
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaggagcagcggattcgggttgaggttgacggccagtcgctggagctgtccaac
ctggacaaagtgctctatccggcggccgggttcaccaagggcgagatcatcaactactac
acgcggatcgcgccggcactgcttccgcacctgcgcggccgggcgctgacccggatccgc
ttcccgaacggcgtgaacgggcagtcgttcttcgagaagaacaagccgggcggtacaccc
gactgggtgcgggtggagacgatgccggtccccgggtcgtccaaggatcgggagacgatc
gactacgtcgtcgcggacgacctgccgacgctcgtgtggctggccaacctcgccgcgctg
gagctgcacaccccgcagtggcggatcggcgagcagccggacctgatggtggtcgacctc
gacccgggtgcgccggccgggctgcgtgagtgctgcacggtcgcggtgctgatgcgcgac
cggctcgccgaggacgggctgaccgcgtacccgaagacgtccggcaagaagggtatgcag
ctcagctgcccgatcgcgggtacgcagtcggccgaggaggtctccgcgtacgccaagcgg
atcgcggaggagctggagcggagcaccccgaagtcggtcacgtcgaagatgatgaagcga
ctgcggccgggcaaggtcttcatcgactggagccagaacagcgccgccaagaccaccgtc
gcgccgtactcgctgcgcgcccagcccacgccgaccgtctccacaccgctgacctgggag
gaggtggagcaaggaggggcgcgggcgttcgcaccggaggaggtgctggagcgggtcgag
gagtacggcgacctgctcgaagacctcctgacacccggtccctccctgccaagttag
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