KEGG   Pyrolobus fumarii: Pyrfu_1977Help
Entry
Pyrfu_1977        CDS       T01620                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pfm  Pyrolobus fumarii
Pathway
pfm03030  DNA replication
pfm03410  Base excision repair
pfm03420  Nucleotide excision repair
pfm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pfm00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    Pyrfu_1977
   03410 Base excision repair
    Pyrfu_1977
   03420 Nucleotide excision repair
    Pyrfu_1977
   03430 Mismatch repair
    Pyrfu_1977
Enzymes [BR:pfm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Pyrfu_1977
    6.5.1.6  DNA ligase (ATP or NAD+)
     Pyrfu_1977
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Pyrfu_1977
DNA replication proteins [BR:pfm03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Pyrfu_1977
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Pyrfu_1977
DNA repair and recombination proteins [BR:pfm03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Pyrfu_1977
   NER (nucleotide excision repair)
    Other NER factors
     Pyrfu_1977
   MMR (mismatch exicision repair)
    Other MMR factors
     Pyrfu_1977
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AEM39830
UniProt: G0EDM6
LinkDB All DBs
Position
complement(1835970..1837799)
Genome map
AA seq 609 aa AA seqDB search
MPMPFSILAETFEKLERTTSRTQMVLYLVDLFKKTPPETIDKVVYFLQGKLWPDWKGLPE
LGVGEKTLIKAVSIALHVPERTVEELAKRLGDLGLAVERLKREKEKGAKAVGLLAFMKQP
SSGESTLTVEKVYDTLARVALTTGEGSRELKLKLVAGLIAEASPREAKYIVRFIEGRLRL
GVGDATIIEALSIVYAGSAAMKHVVERAYNLRADLGLVAKILATQGVEAVKNIKPEVGIP
IRPMLAERLNNPVEILKKLGGRALVEYKYDGERAQIHKKGDKIWIFSRRLENITKMYPDV
VEMALKGIKANEAIVEGEIVAIDPDTGELRPFQELMRRKRKHDIHIAMKEVPVAVYLFDI
LYRDGEDLTVKPLPERRKHLEEVLVQSDTWRLAEHIYTDKPEELEQFFLRAIEDGAEGVM
AKAVHSRSIYQAGARGWLWIKYKRDYKSEMIDTVDLVVVGAFYGKGRRGGKFGALLMAAY
DPDTDTFKTVCKVGSGFTDEDLERLNEMLKPYIIPHKHPRVDSKMKPDVWVQPALVAEII
GAELTLSPIHTCCHGWVKPGAGISIRFPRFIRWRPDKSPEDATTTKELYEMYKRQLHKIE
EKTATREAA
NT seq 1830 nt NT seq  +upstreamnt  +downstreamnt
atgcccatgccctttagcatactagcagagaccttcgagaagctagagaggactaccagc
aggacacagatggtcctctatctcgtagacctcttcaagaagacgccccccgagaccatc
gacaaagtggtgtacttcctccagggtaagctatggccggactggaaggggctacccgag
ctaggcgtgggcgagaagacgctcatcaaggcggtctccatcgcgctccacgtccccgag
aggaccgtggaggagcttgcgaagaggcttggcgacctaggcttagcggttgagaggttg
aagagggagaaggagaagggagccaaggcggtaggtctactcgcttttatgaagcaacca
tctagcggcgagtcaaccctcacagtcgagaaggtgtatgataccctcgcgcgtgtcgcg
ttgacgacgggtgagggcagcagagagctgaagctgaagctagtcgccggtctgatagcg
gaggcctctccccgtgaggcgaagtacatagtcaggttcattgagggtaggcttaggctt
ggtgttggcgacgcgacgataatcgaggcattgtcaatagtctatgccggctcagctgcg
atgaaacatgttgtcgagagggcttacaacctgcgcgccgacctaggcctagtggccaag
atactggccacgcagggcgtagaagcggtgaagaacatcaagccagaggtgggcatccca
atacgcccgatgttggcggagaggctgaacaaccctgtcgagatactcaagaagctaggt
gggagggctctagtcgagtacaagtatgacggcgagcgtgcccagatacacaagaaggga
gacaagatctggatattctcgaggcgcctcgagaacataacgaagatgtacccggatgtc
gtcgagatggcgctcaagggcatcaaggccaacgaggctatcgtggagggggagatcgtc
gcgatagacccggataccggggagctccgacccttccaggagctaatgagaaggaagagg
aagcacgacatacacatagcgatgaaggaggtgccggtggccgtctacctcttcgacatt
ctgtatcgcgacggcgaggatctcacggtgaagcctctccccgagcgcaggaaacaccta
gaggaggtgctagtccagagcgacacctggaggctagcagagcacatctacaccgataag
ccggaggagttagagcagttcttcctacgcgccatagaggatggcgccgagggagtaatg
gccaaggcggtgcactccaggagcatctatcaggctggcgcccgcggctggctatggata
aagtacaagcgtgactacaagagcgaaatgatagacactgtggacctggtggtagttggc
gccttctacggcaagggtaggagaggcggaaaattcggtgcattactaatggccgcctat
gaccccgacacagacacgttcaagacagtctgtaaagtcggcagcggcttcacagacgag
gacctagagagactcaatgagatgctcaagccctacataataccacataagcatcctcgc
gtagactcaaagatgaaaccggatgtctgggtccagccagctctcgtcgccgagataata
ggtgcagaactgaccctatcacccatacacacctgttgccacggctgggtaaaaccaggt
gcaggaatatccataagattcccaaggttcatcagatggaggccagacaagagcccagaa
gacgcgacaacaaccaaagaactatacgagatgtacaagagacaactacacaagatagag
gagaagacagcaacgcgagaggcagcgtga

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