Pseudomonas fluorescens Pf0-1: Pfl01_2097
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Entry
Pfl01_2097 CDS
T00283
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfo
Pseudomonas fluorescens Pf0-1
Pathway
pfo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Pfl01_2097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfo03400
]
Pfl01_2097
Enzymes [BR:
pfo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Pfl01_2097
DNA repair and recombination proteins [BR:
pfo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Pfl01_2097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
ABA73840
UniProt:
Q3KEG6
LinkDB
All DBs
Position
2382341..2384887
Genome browser
AA seq
848 aa
AA seq
DB search
MSRNLDDYNRMRDFSATSEPAAGHRRGKKPAGDHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDP
EKAYAKGKLKFELQGEKLAGVWNLVRTHMPGKKEQWFLIKHQDGAARPQSDYDVLVAEPD
SVLSERTIVDKPRLSAKQVKPLQGPAKAPRKSASGKLTGAHKAKIPAQLKPQLATLVESA
PEGDWQYEIKFDGYRIMARIDQDEVQLFTRNGHDWTHKLPKQAQALAALGLESAWLDGEM
VVADADGVPDFQALQNAFDSGRSENIVYYLFDLPYLNGVDLREVAVEERRAALATVLKTH
QDPLLRFSEAFDETPQALLNSACQMRMEGLIGKRLGSPYVSRRSSDWIKLKCKHRQEFVI
VGYTDPKGARSSFGALLLGLHDRDSGELRYAGKVGTGFNETTLKSILAQLKPLRVKKPAV
ANPPTGFEAKGVHWLKPSLLAEVAFAEMTQDGSVRHAVFHGLREDKPAKDITEERAKPMN
TSKTESTAPSQSGLADGKVRITHPDRVIDASSGTTKMQLAEYYASVAEWILPQLKDRPVA
LVRAPDGIAGDLFFQKNAEHLAIPGIRTLDKELTGQPVMLINNAEALIGAVQMSTVELHT
WNATTTDLDKPDRFVLDLDPDPALPWKSMIEATALTLTVLDELGLKAFLKTSGGKGIHLV
VPLTRKHGWDEVKDFSHAIVTHMAKLLPERFSAVSGPKNRVGRIFIDYLRNGLGATTICA
YAARTREGLPVSVPLFREEVGEIKGADQWNVHNVHERLAEVGDEPWADIKKTRQSITAEM
RKRVGMKK
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggaatctcgacgactacaaccggatgcgcgacttttcagcgacctctgaaccg
gcggctggccaccgccggggcaagaaacccgccggcgaccacgccctgcagttctgcata
caaaagcacgatgcctcgcatctgcattacgactttcgcctcgagctcgacggcgcgctc
aagagctgggcggtgcccaaggggccgtcgctggatcccaaggtcaagcggctggcggtg
cacgttgaggatcatccgctggactacgcgacgttcgagggcagcattcccgaggggcat
tacggcgccggcgatgtgatcgtctgggatcgtggcgtgtggattccgttggaagacccg
gagaaagcctacgccaagggcaagctcaaattcgaactgcaaggcgagaagctcgccggg
gtgtggaacctggtgcgcacccacatgccgggcaagaaagagcagtggtttctgatcaag
catcaggacggcgccgcacgcccgcaaagcgattacgacgtgctggtcgccgagcccgac
agtgtgctcagcgagcgcacgatcgtcgacaaaccccggcttagtgcgaagcaggtcaaa
ccccttcaaggcccggcgaaagcaccccgcaagtcggcctcgggcaagctcaccggggcg
cacaaggccaaaattcccgcgcagctcaaacctcaactcgccaccttggtggagagcgcg
ccggagggcgattggcaatacgaaatcaagttcgacggttatcggatcatggcgcgcatt
gatcaggacgaggtgcagttgttcacccgcaatggccatgactggacgcacaagttgcca
aagcaggcgcaagccctggcggcgctgggcctggagtcggcgtggctggatggtgagatg
gtcgtcgccgatgcggacggcgtgcctgattttcaggccctgcaaaacgcgttcgattcg
ggacgcagcgaaaacatcgtctattacctgtttgatctgccgtatctgaacggtgtcgac
ctgcgcgaggtggcggtggaggaacggcgcgcagcgctggccaccgttctgaaaacccat
caagacccgctgctgcgtttctccgaagcgttcgacgaaaccccgcaggcgttgctcaac
agcgcctgtcagatgcgcatggaaggcctgatcggcaaacgcctcggctcgccttacgtg
tcgcgccgcagcagcgactggatcaagctcaagtgcaagcatcgccaggaattcgtgatc
gtcggctacaccgatccgaaaggcgcgcgcagttcgttcggcgcactgttgctgggtctg
catgatcgtgacagcggcgagttgcggtacgccggcaaggtcggcacgggattcaatgaa
accaccctcaagagcatcctcgcgcagctcaaaccgttgcgagtgaaaaaaccggcagtg
gccaacccgcccacagggttcgaggccaagggtgtgcactggctcaaaccgagtctgctg
gcggaagtggcgttcgccgaaatgacccaggatggctcggtgcgccatgccgtgttccat
ggcttgcgcgaggacaaaccggccaaggacatcaccgaggagcgcgccaaacccatgaac
acttcaaagactgaatctaccgccccgtcccaatccgggctggccgacggcaaggtgcgg
atcactcatcccgaccgggtgatcgatgccagcagtggcaccaccaaaatgcagctggcc
gagtattacgccagcgtcgccgaatggattctgccgcagctcaaggatcgcccggtggcg
ctggtgcgcgcgccggacggcattgccggtgatctgtttttccagaagaacgccgaacac
ctggcgatccccggcatccgcacactcgacaaggagctgaccggccagccggtgatgctg
atcaacaatgccgaagccttgatcggcgcggtgcagatgagcacggtcgaactgcacacc
tggaacgccaccacgacggatctggacaagcccgaccgctttgtcctcgacctcgacccg
gacccggcgctgccctggaaaagcatgatcgaagccacggcactcaccctgaccgtgctg
gatgaactgggcctcaaggcgtttctcaagaccagcggtggcaagggcattcatctggtg
gtgccgctgacccgcaagcatggctgggacgaggtcaaggatttcagccacgccatcgtc
acgcacatggcgaaattgttgccggagcgtttttctgcggtgtccgggccgaaaaaccgt
gtggggcggatcttcatcgattacctgcgcaacgggctgggcgccaccaccatttgcgcc
tacgcagcgcgtacccgcgaaggattaccggtgtcggtgccgctgtttcgggaagaagtc
ggcgagatcaaaggcgccgatcaatggaacgtacacaacgttcacgaacggctcgcggaa
gtaggcgatgaaccttgggcggacatcaagaaaacccggcaaagcatcacggccgagatg
cgcaagcgggtgggcatgaagaaatga
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