Pseudomonas fluorescens SBW25: PFLU_2911
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Entry
PFLU_2911 CDS
T00899
Name
(GenBank) 3'-phosphoesterase (EC (DNA repair polymerase) (NHEJ DNA polymerase) (Polydeoxyribonucleotide synthase [ATP]) (Polymerase/primase)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfs
Pseudomonas fluorescens SBW25
Pathway
pfs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PFLU_2911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfs03400
]
PFLU_2911
Enzymes [BR:
pfs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PFLU_2911
DNA repair and recombination proteins [BR:
pfs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PFLU_2911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CAI2797133
UniProt:
C3KAZ9
LinkDB
All DBs
Position
1:complement(3172472..3174988)
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AA seq
838 aa
AA seq
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MPKPLSEYNRKRDFGVTGEPAGRAPAGKRNASALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPSQKRLAVHVEDHPLSYGSFEGSIPAGQYGAGDVIVWDRGIWQPHDDPRK
AYAAGKLTFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDAQARPADDYDIVQAQPD
SVVSDASAGKSNVKYNVKYNVKYNAKPSTKATRQQAAATALPEQFNPQLATLVDRAPEGD
WQYEIKFDGYRMLTRIRDGEVRLFTRNGHDWTERLPRQVKALQALKLKDSWLDGEVVSLN
GDGLPDFQALQNAFDIGRSLDIVYYLFDAPFLNGQDQRQAPVEARRAALKDALAVSRSKL
LRFSEAFTAHPRDIFESACDLALEGVIGKRLGSPYVSSRSADWIKLKCRLRQEFVIVGYT
RPQGSRSGFGALLLAVNDDAGLVYAGRVGTGFDHASLKAIYAQLKPLERKTSPLEKPLSS
AQARGVHWVEPTLVGEVQFAEWTREGVVRQAAFVGLRSDKPAAEIIHELPRTANAMKPAK
KTSAAVTITHPDRVIDPQSGTRKQQLAQFYDSISQWILPFLRHRPVSLLRAPEGIEGEPF
FQKHSERLAIPNIKHLDQALDPGHARLMEIDSTRALIGAVQMGAVEFHTWGATSDKIETP
DLFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLVVPLARRDGWDT
VKAFAKAIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPV
SVPISREELKGLRSAQQWTVANVQQRLNGLKADPWAGYTNRQKLSQKMWDKLGARPPV
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagcccctcagcgagtacaaccgtaagcgcgacttcggcgttaccggcgaaccg
gcaggccgtgcacctgccggcaaacgcaacgcgtcggcgctgtcttttgtgatccagaaa
catgacgcgcgcaacctgcactatgactttcgcctggaactcgacggcgtgctgctcagt
tgggcggtgcccaagggcccgagcctggacccgagccaaaagcgcctggccgtccacgtg
gaagatcaccccctcagctatggcagcttcgaaggcagtattcccgccggccaatacggc
gctggcgacgtcatcgtgtgggatcgcggcatctggcaaccccatgatgacccgcgtaag
gcctacgccgccggcaagctcacattcaccctggtcggcgagaaactctccggcgactgg
gcgctggtgcgcacccgcctgaagggcagcggcgacaaggaacaatggctgttgatcaag
gaaaaggacgcgcaggcgcgcccggcagacgactacgacatcgttcaggctcaaccggac
agcgtggtcagcgacgcctcggcaggtaaatccaacgttaaatacaacgttaaatacaac
gttaaatacaacgccaagcccagcaccaaagctacgcgacaacaagcagcggcaaccgcc
ctccccgaacaattcaacccacaattggccacgctggtggaccgcgcccccgaaggcgac
tggcagtacgaaatcaagttcgacggttaccgcatgctcacgcgcattcgtgacggcgag
gtgcgcctgttcacccgcaacggccatgactggaccgaacgcctgccgcgccaggtcaag
gccctgcaggccctcaagctcaaggacagctggctcgacggcgaggtggtcagcctgaac
ggcgacggcctgccggacttccaggcactgcaaaacgccttcgatatcggccgcagcctg
gacattgtctactacctgttcgatgcgccattcctcaacggccaggatcaacgccaagcg
cctgtcgaggcacgccgcgccgcgctcaaggacgcgctggccgtaagcagaagcaagttg
ctgcggttctccgaagccttcaccgcccaccctcgcgatatcttcgaaagtgcctgtgac
ctcgccctggaaggcgtgatcggtaagcgcctgggcagcccctatgtgtcgagtcgcagt
gccgattggatcaagctcaaatgccgcctgcgccaggagttcgtgatcgtcggctacacc
cggccacagggttcacgcagtggtttcggcgcgctgttgctggcggtgaatgacgatgcc
gggctggtgtatgccgggcgtgtgggcacaggctttgatcacgcgtcactgaaagcgatt
tacgcgcaactcaagcccctggaacgcaagacatcgccgctggaaaagccgctgagcagc
gcccaggcccgtggcgtgcactgggtggagccgacgttggttggcgaggtgcaattcgcc
gaatggacccgggaaggtgtggtccgccaggcggcattcgtggggctgcgcagcgacaaa
ccggccgccgagatcattcacgagctaccacgaacggccaacgccatgaaacccgcgaaa
aaaaccagcgctgcggtaacgatcacccaccccgaccgggtgatcgacccgcaaagcggc
acccggaagcagcaactggcacagttctacgacagcatcagccagtggatcctgcccttc
ctgcgccaccgccctgtttcattgctgcgagcgcctgaaggcatcgaaggcgagccattc
ttccagaaacattcagagcgcctagccattcccaacatcaagcacctggatcaggcactc
gacccagggcatgcgcgcctgatggaaatcgacagcacccgcgcgttgatcggtgccgta
caaatgggtgccgtagaatttcacacctggggcgccacctcagacaagatcgaaaccccc
gacctgtttgtgctcgatctcgacccggacccggcgctgccctggaaagccatgctggaa
gcggcgcaactgaccctgtcggtgctggatgaactggggctgcaagcgttcgtcaagacc
agcggaggcaagggactgcacctggtcgtgccactggcgcgccgcgacggttgggacacc
gtcaaggcgttcgccaaggccatcgcccagttcatgaccgagcaactgcccgagcgtttt
accgcgacgtcagggcccaaaaaccgcgtcggcaagatctttatcgactacctgcgcaac
gcgcggggcgccagcaccgtggcggcctactccgtgcgggcacgccctggcctgccggtg
tcggtgccgatcagccgtgaggagttgaagggtttacgcagcgcgcagcaatggactgtc
gccaatgtgcagcagcggttgaacggtttgaaggctgatccctgggccgggtataccaac
cgacagaaactcagccagaagatgtgggacaaattgggcgcccgtccaccggtgtga
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