Pseudomonas fulva: Psefu_2816
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Entry
Psefu_2816 CDS
T01501
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfv
Pseudomonas fulva
Pathway
pfv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Psefu_2816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfv03400
]
Psefu_2816
Enzymes [BR:
pfv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Psefu_2816
DNA repair and recombination proteins [BR:
pfv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Psefu_2816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AEF22780
UniProt:
F6AI24
LinkDB
All DBs
Position
complement(3035897..3038455)
Genome browser
AA seq
852 aa
AA seq
DB search
MAKATSAYNRKRNFDSTSEPREPARRSRAKAGALTFVVQKHDARRLHYDFRLELEGTLKS
WAVPKGPSLDPSQKRLAVHVEDHPLAYASFEGSIAEGNYGAGDVIVWDHGIWQPEGDPVA
GYESGKLKFTLIGEKLSGAWTLVRTRLKGSGDKQQWLLIKEQDDVARPADEYDIVSELPA
SVISGELVGGMEKPAANQARKSQSRSKAPAKPSRKKAAKAAMPDSLSPELATLVESPPAG
DWLYEIKYDGYRIMARVKEGEVTLFSRNGHDWTARMAPQAKALEKLKLGDSWLDGEAVVL
DEQGMPDFQALQNAFDDARSGDILYFLFDAPWLDGVDQRELPVEQRRDALQKKLPKRKGP
LRFSEAFEVDHQSVLGSACALGLEGVIGKRAGSPYRSSRSADWIKLKCRQRQEFVVVGFT
KPQGSRSGFGALLLAVNEAKGLRYAGRVGTGFNEALLANLHKRMKALARDDSPLHKQPSA
AQRRGVQWIEPQLVVEVAFAGWTGEGLVRQGAFVGERSDKPAEQIIEEQPASAKAVEEGA
STEKTTSKAKARKGREQIGEVSVSHPERVIDEQSGTTKAQLARFYAEIADWLLPDVRNRP
VSLLRAPGGVGGEQFFQKHAERLAIPNIHHLDADLDPGHDRLMAIDSAPALIGAVQMGTI
ELHTWNAAYASIERPDRLILDLDPDPALPWRAVMEATRLSLSVLDELGLETFVKTSGGAG
MHLVVPLARHVDWDTLKAFGKAISQFMASELPDRFSARMGPKNRIGKVYLDYLRNGRGAS
TVAAYSVRARPGLPVSVPIRREELGQLRDSKQWHIGNLQQRLAKLDEDPWAGYANRQRIP
KAMWRKLGVEAP
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggcaaccagtgcatacaaccgcaaacgcaatttcgactccaccagtgaaccc
cgcgaacccgcgcggcgcagccgagccaaggctggtgcgctgacgttcgtggtgcagaag
cacgacgcccggcgcctgcattacgactttcgcctggagctggaaggcaccctgaaaagc
tgggccgtgcccaagggcccgagcctggacccgagccagaagcgtctggcggtgcacgtc
gaggatcacccgctggcctacgccagcttcgagggcagcatcgccgagggcaattacggc
gcaggcgatgtgatcgtctgggatcacggcatctggcagcccgagggcgatcccgtcgcg
ggctatgaatccggcaagctgaaattcaccttgatcggcgagaagctaagtggcgcctgg
acgctggtgcgcacacgcctgaaaggcagcggcgacaagcagcaatggctgctgatcaag
gagcaggacgacgtggcccggccggctgacgagtacgacatcgtcagcgagctgccggcc
agcgtgatcagcggcgagctggtgggtggcatggaaaagcccgccgccaaccaggcgcgc
aagagccagtcgcgcagcaaggcacctgccaagccgagccgcaagaaagccgccaaggcg
gccatgccggacagcctgtcgccagagttggccaccctggtcgagtcgccgccggccggc
gactggctctacgagatcaaatacgacggctaccggatcatggcccgcgtcaaagaaggc
gaggtgaccctgttcagccgcaacggccatgactggacggcgcgcatggcgcctcaggcc
aaggcgctggagaagctcaagctcggcgacagctggctggacggcgaggctgtggtactc
gatgagcagggcatgccggatttccaggctttgcagaacgccttcgatgacgcccgtagc
ggcgacatcctgtatttcctgttcgacgcgccctggctcgatggcgtcgaccaacgcgag
ttgccggtcgagcagcgccgcgacgcactgcagaagaaattgcccaagcgcaaaggcccg
ctgcgtttctccgaggcgttcgaggtcgatcaccagagcgtgctgggcagcgcctgcgcc
ctgggcctggaaggtgtgatcggcaagcgcgccggcagcccgtaccggtcctcgcgcagc
gccgactggatcaagctcaagtgccggcagcgccaggagttcgtggtggtcggtttcacc
aagccacagggcagccgctcgggcttcggtgcgcttttgctggcggtcaacgaggcgaag
ggcctgcgctacgccggacgggtcggcaccggcttcaacgaggcgctgctcgccaacctg
cacaagcgcatgaaagccctggcgcgggacgactcgccgctgcacaagcagcccagcgcg
gcgcagcgccgtggcgtgcagtggatcgagccgcaattggtggtcgaggtggcctttgcc
ggctggactggagaaggcctggtgcgtcagggtgccttcgtcggcgagcgcagtgacaag
ccggccgagcagatcatcgaggaacagcctgcgtcagccaaggcggtagaagagggcgca
tccaccgagaaaacgaccagcaaggctaaagcccgcaagggccgtgagcagatcggcgaa
gtatcggtgagccacccggagcgggtcatcgatgagcagagcggtactactaaggcgcag
ctggcacgcttctacgccgagattgccgactggctgctgcccgacgtgcgcaaccggccg
gtatcgttgctgcgcgcaccaggcggcgttggcggcgagcagttcttccagaagcatgcc
gagcgcctggcgattcccaatattcatcatctggatgccgacctcgatcccggccatgac
cgcttgatggctatcgatagcgcaccggccctgatcggtgccgtgcagatgggcaccatc
gagttgcacacctggaatgcggcgtacgccagcatcgaacggccggaccggctgatcctc
gacctcgatccggacccggcgctgccctggcgcgccgttatggaggccacccgcctgagc
ctctcggtgctcgacgagctgggcctggaaaccttcgtgaaaaccagcggcggtgccggc
atgcacctggtggtgccgttggcccggcatgtcgactgggacacgcttaaggctttcggc
aaggcgatctcgcagttcatggccagcgaattgccggatcgcttcagcgcccgcatgggc
ccgaagaaccgcatcggcaaggtgtatctggattacctgcgcaacggtcgcggtgccagc
accgtggccgcctattcggtgcgtgcgcggccgggcttgccggtatcggtgccgatccgc
cgcgaggaactggggcaattgcgcgactcgaagcagtggcatatcggcaatctgcaacag
cgcctggccaagctcgacgaggatccctgggccggctatgccaatcgccaacgcatcccc
aaagccatgtggaggaagctcggcgtcgaggcgccctga
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