Pseudomonas lurida: A7318_14040
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Entry
A7318_14040 CDS
T04730
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfx
Pseudomonas lurida
Pathway
pfx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A7318_14040 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfx03400
]
A7318_14040 (ligD)
Enzymes [BR:
pfx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A7318_14040 (ligD)
DNA repair and recombination proteins [BR:
pfx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A7318_14040 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOE79673
LinkDB
All DBs
Position
3149238..3151727
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AA seq
829 aa
AA seq
DB search
MAKPLSEYNRKRDFSITGEPAGSAPAAKRQASALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPAQKRLAVHVEDHPLSYGSFEGSIPTGQYGAGDVIVWDRGVWQPHDDPHK
AYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDSQARPADDYDIVQAEPN
SVVSDASVGKPRAQPKAKAKAKAKPQKATPPLPEDFSPQLATLVDRAPEGDWQYEIKFDG
YRMLARIRDGEVRLFTRNGHDWTDRLPRQAKALQALKLKDSWLDGEVVSLNGDGLPDFQA
LQNAFDIGRSLDIVYYLFDAPFLNGQDRRQAPVEDRRAALKAALAGSRSKLLRFSEAFTA
HPRDIIESACDLALEGVIGKRLGSPYASSRSADWIKLKCRLRQEFVIVGYTRPQGSRSGF
GALLLAVNDDSGLVYAGRVGTGFDQASLKTIYTQLTPLERKVSPLEKPLTSAQARGVHWV
EPTLVGEVQFAEWTREGVVRQAAFVGMRTDKPAAQIIHEQPRTAKSMKPTKKTGAGVNIT
HPDRVIDTQSGTQKQQLAQFYDSISQWILPFLSHRPVALLRAPEGIEGEQFFQKHSERLA
IPNIKQLDQALDPGHARLMEIDSVGALIGAVQMGTVEFHTWGSTKDKIETPDLFVLDLDP
DPALPWKAMLEAVQLTLSVLDELGLQAFVKTSGGKGLHLVVPLARRDSWDTVKAFAKAIA
QFMTAQLPERFTATSGPRNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPISREEL
KGLRSAQQWTVANLAQRVRGLKADPWAGYANRQKISKKMWDKLGAHPPE
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcccctgagcgagtacaaccgcaagcgcgacttcagcatcactggcgagccg
gcaggcagcgcgcctgctgccaaacgccaggcgtcagcgctgtccttcgtgatccagaaa
catgacgcgcgcaacctgcattatgactttcgcctggagctcgacggcgtgttgctcagt
tgggcagtgcccaagggcccaagccttgaccctgcgcaaaagcgcttggccgtccacgtg
gaagaccaccctctcagttatggcagcttcgaaggcagtattcccaccggccaatacggc
gcaggcgatgtcatcgtgtgggaccgtggcgtgtggcaaccccacgacgatccgcacaag
gcctacgccgctggcaagctcaagttcaccctggtcggcgagaaactttccggcgactgg
gcgctggtgcgcacgcgcctgaagggcagcggcgataaagaacaatggctgttgatcaag
gagaaggactcccaggcacgcccggccgatgactacgatatcgtccaggccgaaccgaat
agcgtggtcagtgacgcttcggtcggcaagccccgtgcccagccaaaggccaaagccaaa
gccaaagccaagccgcaaaaagcgacgccccccctcccagaagacttcagcccgcaactg
gccacgctggtggaccgcgcaccggagggcgactggcaatacgaaatcaagttcgacggc
tatcgcatgctcgcacgcattcgagacggcgaagtgcgtctgttcacccgcaacggccac
gactggaccgatcgactaccgcgtcaggccaaggccctgcaggccctcaagctcaaggac
agttggctcgacggcgaggtggtcagcctcaacggcgacggcctgccggatttccaggcg
ttgcaaaatgcctttgatatcggccgcagcctggacattgtctattacctgttcgatgcg
ccgtttctcaatggccaggatcgacgccaggcgcccgtcgaggatcgccgtgctgcactc
aaggccgcgttggccggcagcaggagcaaactattgcgtttctcggaagccttcaccgcc
caccctcgcgacatcattgaaagtgcctgtgacctggcgctggagggtgtgatcggcaag
cgcttgggcagcccgtatgcgtccagtcgcagcgcggactggatcaagctcaaatgccgt
ttgcgccaggaattcgtgattgtcggctacacccggccacagggttcgcgcagcggtttc
ggggcgctgttactggccgtgaatgacgactccgggctggtgtacgccgggcgtgtgggc
accggcttcgatcaggcgtcactgaaaacgatctacacgcaactcacgccactggaacgc
aaggtatcacctctggaaaaacccctgaccagtgcgcaagcccgcggcgtgcactgggtg
gagccgacgttggttggcgaggtgcagtttgccgaatggacccgtgaaggcgtggtccgc
caagcggcgtttgtcggaatgcgtacggacaaacccgccgcgcagatcattcatgagcaa
ccgcgaacggccaaatccatgaagcccacgaaaaaaaccggcgcaggggtgaatatcacc
cacccagaccgcgtgatcgacacacaaagcggcacgcaaaaacaacaactggcgcagttc
tacgacagcatcagccagtggatcctgcccttcctaagccatcgcccggttgctctactg
agggcgccggaaggcatcgagggcgagcagttcttccagaaacactccgaacgtctcgct
attcccaacatcaagcaactggatcaggccctcgacccgggccatgcgcgcctgatggaa
atcgacagcgttggcgcgttgatcggcgcagtgcagatgggcaccgtagagtttcacacc
tggggctcgactaaggacaaaatcgagacccccgacctgtttgtgctcgatctcgacccg
gacccggcgctgccttggaaagccatgctcgaagcggtgcagttgaccctctcggtgctg
gacgagttggggctgcaagcgttcgtcaagaccagcggtggcaaaggcttgcacctggtc
gtgccgctggcgcgccgggacagttgggacaccgtcaaggcattcgccaaggccatcgcg
cagttcatgacggcgcaactgcccgagcggtttaccgcgacgtcggggcccaggaatcgg
gtcggcaagatctttatcgactacctgcgcaatgcacgcggggccagtaccgtcgccgcg
tactccgtgcgggcacgcccgggtctaccggtgtcggtgccgatcagccgcgaggaattg
aaaggattacgcagtgcccagcaatggacggtcgccaacctggcgcaacgcgtcaggggc
ttgaaggccgatccctgggcgggttatgccaaccgacagaagatcagcaagaagatgtgg
gacaaactgggcgcccatccacccgagtga
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