Pestalotiopsis fici: PFICI_02825
Help
Entry
PFICI_02825 CDS
T04924
Name
(RefSeq) hypothetical protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03018
RNA degradation
pfy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PFICI_02825
09123 Folding, sorting and degradation
03018 RNA degradation
PFICI_02825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfy03019
]
PFICI_02825
03041 Spliceosome [BR:
pfy03041
]
PFICI_02825
Messenger RNA biogenesis [BR:
pfy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PFICI_02825
mRNA degradation factors
5'-3' decay
Lsm complex
PFICI_02825
Spliceosome [BR:
pfy03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PFICI_02825
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
19267838
NCBI-ProteinID:
XP_007829597
UniProt:
W3XFJ5
LinkDB
All DBs
Position
Unknown
AA seq
148 aa
AA seq
DB search
MADRPHQRGGRGGGGGERGHRGGGRGGRGGRGGGHHHGDKDGHHSHSHDNKQGERPKKEN
ILDLGKYMDKRITVKFNGGRECTGTLKGYDALMNLVLDEVQEVVRDDEGNESTRPLGLVV
ARGTLLVVISPVDGSEEIQNPFAEVSED
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atggccgacagaccccaccagcgcggcggccgcggaggcggaggaggagagcgtggccac
cggggaggaggccgtggcgggcgcggaggacgcggcggaggccatcaccacggggacaag
gacggtcatcactctcactcccacgacaacaagcagggcgagcgccccaagaaggaaaac
atcctcgacctcggcaagtacatggacaagcgcatcacagtcaagtttaatggcggccgc
gaatgcaccggtaccctcaagggctacgatgcgctcatgaatctggtcctggacgaggtg
caggaggttgtcagagacgacgagggtaacgagagcacgagaccgctgggacttgtcgtc
gcacgaggaacgctgcttgtcgtcatcagcccagtggacggcagcgaggagatccagaac
cccttcgccgaagtgtctgaggattaa
DBGET
integrated database retrieval system