Pestalotiopsis fici: PFICI_14546
Help
Entry
PFICI_14546 CDS
T04924
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PFICI_14546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfy03400
]
PFICI_14546
Enzymes [BR:
pfy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PFICI_14546
DNA repair and recombination proteins [BR:
pfy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
PFICI_14546
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
RNA_ligase
DNA_ligase_A_C
DNA_ligase_IV
mRNA_cap_enzyme
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
19279559
NCBI-ProteinID:
XP_007841318
UniProt:
W3WI38
LinkDB
All DBs
Position
Unknown
AA seq
998 aa
AA seq
DB search
MSQRRAKERDAGAVEEEVRQYTFGGHTLEEFDENYPNRPKNHSRTLRFAELFQNLFNPLN
ENKKKPPGPAARRKQRGGRGPSQLSPHEQRRAIIERFMSRWRAEVGNDFYPAMRLILPNQ
DRDRGVYGLKESAIGKLLVRTLKIDKYSTDGQSLLQWKRPGQKASQTAGDFAGRCLEVIA
KRPMRSSPGDMRVAEVNEMLDKLSAASGEAEQLPIIEDFYQKMSPEELMWLIRIILKEMK
VGATERTFFDIWHPDAEALFNVSSSLRRVCWELYDRDVRLNDDDTGVTLMQIFQPQLAQY
QYFGSWKKMVDQLTRDKENNTIREDAEFWIEEKLDGERMQMHMMEDKTVPGGFRFGWWSR
KAKDYAYLYGTGLRDRDSALTQHLKNAFVPGVRSIILDGEMVTWDMQLDKIMAFGTLKSA
ANAGKRNPYDEVGARCLYRVFDIVYLNGQELTRYTLQDRRNALEKAVPGVHRRLELHDHL
VSTSAADIEPHLRQVVENRSEGLVIKNPLSVYSLNQRNDDWIKVKPEYIKEYGEAVDVVI
IGAYYGTGHRGGAHSSFLCGLRVTDDDIERGADPEKCFSFIRVGGGFALQDYREIANRTQ
GKWTDWNSKRPPSKYIELAGGERQWWKPDQWIRPKDSVVIAVKAASSVPSDQYAKQITLR
FPRFQKLRDDRDWDTALDWRQFEDLKTQIAVKQEEKEMNFERRRRNTKRIKKEMVIMGQE
ATPVEFGGPKTKLFQGLEFCVLSESVQPKKSKTQIEVLIKENGGRISQRAIPNADMILIG
DKKVLKVASLIKAGPVDIISPKWVLDCVAQSDASAGFLLPYEPRHLFHVSDEMKEQAQEN
LDDYGDSYARDIDVAELKALLQDMPKNEIIDEPFHSGAFVEQLEAHGHDIGNIKGHMFKR
VVAHFATADNVLDISVLKYKNWVRFGGGIIVDDLEDRSVTHVVVVAKDDDPRAERDLSAE
IRSVISKRTQIPRLVTRKWLEDCWTEGTMLDEERFSPQ
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgagccaacgccgagccaaagagcgcgatgcaggcgccgtggaggaggaagtacgacaa
tatacctttggcggacacaccctcgaggaattcgatgaaaactatccaaataggccgaag
aatcactcgcggactttgagatttgcagaattattccagaacttgttcaacccattaaat
gagaacaaaaaaaagccacctgggccagcggctcgtcgcaaacaaagaggcggccgcggc
ccttcgcagctgtcgccacatgaacagcgccgtgccatcattgagaggttcatgtcaaga
tggcgcgcagaggttggaaatgacttttatcctgccatgcgactgattctacccaatcaa
gatcgtgatcggggcgtctacggcctcaaagaaagcgccattggcaaattgcttgtgcga
accctcaagattgacaagtattccaccgatggacaaagcctactccaatggaaacgaccg
ggccagaaagcgagtcagacggcaggtgactttgctggtcgctgtttggaggtgattgcc
aagcgtcccatgcgctcgagccccggggacatgcgcgtagcagaggtcaacgagatgctg
gacaagttatctgctgcctcgggcgaggctgagcagttaccaattattgaggacttttac
cagaaaatgagtccagaagagcttatgtggctcatccggatcatcctgaaggagatgaaa
gttggtgccacggaaaggacattcttcgacatatggcaccctgacgccgaagctctcttc
aacgtatcctctagtctccgacgtgtctgctgggagttgtatgatcgagacgtacgcctc
aatgatgatgacacgggcgttaccttgatgcagatcttccagcctcaattagcccagtat
caatattttggcagctggaaaaagatggtagatcagctaacgagagacaaggagaataac
acaatcagagaggatgccgagttctggattgaggagaagctcgatggagaacgcatgcag
atgcacatgatggaagacaaaactgtgcctggaggatttcgctttggctggtggtcccgc
aaagccaaggactatgcctatctttacggtaccggcttgcgtgatcgcgactcggcactt
acgcaacatctcaaaaacgcctttgtccctggagtccggagcatcattctagacggcgaa
atggttacgtgggatatgcaactagacaaaatcatggcctttggaactctcaagtccgcg
gcgaatgccggcaaacgaaacccgtacgatgaggttggggcacgttgtctatatcgtgtc
tttgacattgtttacttgaacggtcaggaattgaccaggtacactcttcaagaccgacgt
aacgcgctggagaaggccgtgcctggcgttcaccgaagacttgaactacacgatcatttg
gtgtcaacgtcagcggccgatattgaaccgcatctgcgacaagtagtcgagaatcgatcc
gaaggcctagtcatcaagaatccgctttctgtctacagcctgaatcagcgcaatgatgat
tggatcaaggtgaaacccgagtacatcaaggagtatggagaagccgtcgatgtagtcatt
attggcgcatattatggaactggacaccgtggtggcgcccactccagtttcttgtgtgga
cttcgggtcactgatgacgatattgaacgtggtgcagaccctgagaagtgcttcagcttt
atcagagttggtggtggcttcgctctacaagactaccgcgagattgcaaaccgaacacag
ggcaaatggacagactggaactcaaaaaggccaccgagcaaatacattgagctggctgga
ggtgagaggcaatggtggaaaccagaccaatggatccgacccaaagattcggtagtgatt
gctgtgaaagcagccagctctgttccctcggatcagtacgcgaaacagataacattaaga
tttccacgattccaaaagctccgtgatgaccgtgattgggatacagccctcgactggcga
caattcgaagatctcaagacgcagattgcagtcaaacaggaagagaaggagatgaatttt
gaacggcgaagacgaaacactaagcggatcaagaaggaaatggtcatcatgggtcaagaa
gcgacaccggtcgagtttggcggcccaaagaccaagctctttcaaggtctcgagttttgt
gtcttgtcagaatccgtgcagccaaagaagagcaagactcagattgaagtcctgatcaag
gagaatggtggcaggatatcccagcgagcgatcccaaatgccgacatgatattgattggt
gacaaaaaggtcctcaaggtggccagtttgatcaaggcaggcccggtcgacattattagt
ccaaagtgggttctcgactgcgtggcacagagtgatgccagcgcgggtttcctcctacca
tatgagcctaggcacttgtttcacgtttcggatgagatgaaggagcaagcccaagagaac
ctggacgactatggcgacagctatgcccgagacattgatgtcgcagagctcaaggccctc
ttgcaggatatgcccaagaatgaaatcattgatgaaccttttcattcgggcgcattcgtc
gagcagctcgaggcgcatggtcatgatataggaaacatcaagggccatatgttcaagaga
gtggtggcccactttgcaacagcggataatgttttggatatctctgttctcaagtacaag
aattgggttagattcggcggaggcatcattgttgacgatctcgaggaccgatccgtcact
cacgtcgtggtagtcgctaaagacgacgatccacgtgctgaacgagacctttccgcagag
attcgatccgtcataagcaaaagaactcagattccccggctggtaactcgaaaatggctg
gaggattgttggactgaaggcactatgttggacgaggaaagattctcgccgcaatga
DBGET
integrated database retrieval system
