Pseudomonas fragi: AV641_06875
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Entry
AV641_06875 CDS
T04285
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfz
Pseudomonas fragi
Pathway
pfz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV641_06875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfz03019
]
AV641_06875
03009 Ribosome biogenesis [BR:
pfz03009
]
AV641_06875
Enzymes [BR:
pfz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AV641_06875
Messenger RNA biogenesis [BR:
pfz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AV641_06875
Ribosome biogenesis [BR:
pfz03009
]
Prokaryotic type
rRNA helicases
AV641_06875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AMB78806
LinkDB
All DBs
Position
1453188..1454861
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEAIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLTPLVADAESTHGDLLDRLIADIGCSPRAL
AAALLRKATNGQALTLAAIERDRPLVPNSAPRERSSERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEVGLESLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaatccgaacattcttgcagct
gtcattgcgactggctacgaagaaccttcggctattcagcagcaatcgatcccgatcatt
atggccggtcacgacatgattggtcaggcgcaaaccggtacgggtaaaaccgccgcgttc
gccctgccgatcctgcatcgcatcgatcctgctaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacttatgccaagcaa
atgcctggcgttaccgttgtggccgtttacggcggcgcccctatgggtccacaactgaaa
gcaatccgtaatggcgcacagattgttgtcgccactccgggccgtctgtgcgaccacttg
cgtcgtgacgaaaaagtattggcaaccgtgaaccacctggttctcgacgaagctgacgaa
atgctcaagctgggcttcatggatgaccttgaagcgatcttcaaggctttgcctgctacc
cgtcagaccgtattgttctcggctaccctgccgcagtcgatccgtgccattgccgaacgc
catctgcgcgatccgcaacacgtaaaaatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagatttcgacgccctgatcatgttcgtacgtaccaagcaagcgaccctggat
ctggcaagtgccctggaagccaaaggctataaagctgctgcgctgaacggtgacattgct
cagaaccaacgtgagcgcgttatcgaatccctcaaggatggccgtctggacatcgttgta
gcgaccgacgtagcggctcgtggtcttgatgttccacgtatcactcacgtgttcaacgtt
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtactggccgtgcaggt
cgcgaaggtcgcgcgctgttgctggtaactccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcaaaaggttgctgaagtccgcctgccggatgctcaagctgtcctc
gatgcccgcatcaagaaattgaccaacagcctgacgccactggttgctgacgctgaatcg
acccacggtgatctgctggatcgcctgattgccgatatcggttgcagcccgcgtgctctg
gccgctgccctgttgcgcaaagctaccaacggtcaggctctgactttggctgcgatcgag
cgcgaccgtccactggtgccgaacagcgcaccgcgtgagcgttcgtccgagcgtactggc
gaccgtccggatcgtggtgatcgtgagcgtcgtgctccggttccattggccgaaggtcgt
gcccgttgccgtactgcgttgggtgcgcgtgacggtatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggtctggcacgtgaagcaatcggtcgcatccaggtgcgtgac
agcttcagcctggtagaactgccggaagttggtctggaaagcttgctggccaagctcaaa
gacacccgcgttgccggcaagcagctcaagctgcgtcgctaccgcgaagattaa
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