KEGG   Pseudomonas fragi: AV641_20755
Entry
AV641_20755       CDS       T04285                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
pfz  Pseudomonas fragi
Pathway
pfz02024  Quorum sensing
pfz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AV641_20755
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AV641_20755
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfz03019]
    AV641_20755
   03036 Chromosome and associated proteins [BR:pfz03036]
    AV641_20755
Messenger RNA biogenesis [BR:pfz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AV641_20755
Chromosome and associated proteins [BR:pfz03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AV641_20755
SSDB
Motif
Pfam: Hfq LSM Gag_p24_C
Other DBs
NCBI-ProteinID: AMB81331
LinkDB
Position
complement(4616537..4616797)
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSAAESELADAEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacttgaatactttgcgtaaagagaaggtt
ggcgtttccatctacctggtcaacgggatcaagctgcaggggactatcgagtctttcgac
cagttcgtgattctgctgaaaaacaccgtgagccaaatggtttacaaacacgctatctcg
acagtcgtaccagtacgtcctattcgtctgccaagcgcagctgaatcggaactggcagac
gctgaaccaggtaacgcctga

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