Pseudomonas fragi: AV641_20755
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Entry
AV641_20755 CDS
T04285
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
pfz
Pseudomonas fragi
Pathway
pfz02024
Quorum sensing
pfz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV641_20755
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
AV641_20755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfz03019
]
AV641_20755
03036 Chromosome and associated proteins [BR:
pfz03036
]
AV641_20755
Messenger RNA biogenesis [BR:
pfz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
AV641_20755
Chromosome and associated proteins [BR:
pfz03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
AV641_20755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Gag_p24_C
Motif
Other DBs
NCBI-ProteinID:
AMB81331
LinkDB
All DBs
Position
complement(4616537..4616797)
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AA seq
86 aa
AA seq
DB search
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSAAESELADAEPGNA
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagggcattcgctacaagacccttacttgaatactttgcgtaaagagaaggtt
ggcgtttccatctacctggtcaacgggatcaagctgcaggggactatcgagtctttcgac
cagttcgtgattctgctgaaaaacaccgtgagccaaatggtttacaaacacgctatctcg
acagtcgtaccagtacgtcctattcgtctgccaagcgcagctgaatcggaactggcagac
gctgaaccaggtaacgcctga
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