Phaeobacter inhibens DSM 17395: PGA1_c24190
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Entry
PGA1_c24190 CDS
T02192
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pga
Phaeobacter inhibens DSM 17395
Brite
KEGG Orthology (KO) [BR:
pga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pga03019
]
PGA1_c24190 (hrpB)
Enzymes [BR:
pga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PGA1_c24190 (hrpB)
Messenger RNA biogenesis [BR:
pga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PGA1_c24190 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AFO92104
UniProt:
A0AA85ZBG1
LinkDB
All DBs
Position
2522356..2524860
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AA seq
834 aa
AA seq
DB search
MTRLPIDDALPELIAALQRQKRAVLQAPPGAGKTTRVPLAMLEAGLCAGRILMLEPRRLA
ARAAAERMADTLGEPVGQTVGYRIRGEAKVSAETRIEVVTEGILTRILQSDPDLPGVGAV
IFDEFHERSLSADFGLALCLEVAGALRDDLILLAMSATLDAAPVAELMEAPLVTSEGRSY
PVETRWLDTPLPADSRSGRGPRRLDALVDLVLRAEAESRPAGSGGRGGSEAKGGGILVFL
PGEGEIRKAAAALAGRLPGDCVVRPLFGALPFAEQRAAIQPDPVARKIVLATSIAETSLT
IQDIRVVVDMGLARRSRFDPGSGMSRLVTERVTRAEATQRQGRAGRMAAGVGYRLWTKGE
DGALAAFPPPEIQAADLTSLALELALWGAGPDDLPFLTPPPEGALKEAQALLRMLGALDG
EGRITSHGKVLAKLPLHPRLGHMLARFGADAAPLAALLAERDPLRGAPVDLALRLEALRD
AKAFQRRRSYQLNIPTLERIKGEAKRLTRQARSGASSASASAAVMAAAAYPDRIGQRRKG
DAPRYVLSGGKGAVLPPEDSLAATPFLVGLDSDGNPREARLRLAAPITLSELRSAFADQI
KPQLTCVWSKRDRRVVARRQQCLGAIVLEDHIWKDVPADAIATAMLEGVRELGLRLSGAA
ARFVARVRLLQADGEDLPDFSEEALLATLEDWLLPMLDGVRSAEDWKRFDLLPALRTALS
WEQTQRLDQMAPPHFTTPLGRKVPIDYAEEVPEISVRLQEMFGVTRHPTVGGVALKVSLL
SPAQRPIQITRDLPGFWSGSYADVRKDMRAQYPKHPWPEDPTQADPTLRAKPRK
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgaccagattgcccattgatgacgccctgcccgaattgattgctgctctgcaacgccag
aaacgcgccgtgttgcaggccccgccgggggcaggcaagaccacgcgggtgcctttggcg
atgctggaggccgggctgtgtgcaggccgtatcctcatgctggagccgcgccgactggcc
gcgcgcgccgctgccgaacgcatggccgacacattgggcgagccggtcgggcagaccgtg
ggctaccggatcaggggtgaggcgaaggtcagcgccgagacgcggatcgaggttgtcacc
gaaggtatcctgacgcggatactgcaatcggaccccgacctgcccggcgttggcgcagtg
atttttgatgaattccacgaacggtctcttagtgccgattttggtctggcgctctgtctg
gaggtggccggcgccttgcgcgacgatctgatcctgctggccatgtccgccacgttggac
gccgccccagtcgccgaattgatggaggcgccactggtaacctccgaggggcgcagctac
ccggttgagacccgctggctggacactcccctgcccgccgacagccgaagcgggcgcggc
ccaaggcggctggatgcgctggtcgatctggtgctgcgcgccgaagccgaaagccgcccc
gcaggatcgggcggcagaggcgggtccgaggccaagggcggcggcattctggtgttcctc
cccggcgagggcgaaatccgcaaggcggccgccgcactggctggccggttgccgggggat
tgcgtggtccgcccactgtttggtgccctgccctttgctgagcagcgcgcggcgatccag
ccggaccctgtggcgcgcaaaatcgtgctggcgacctccattgcggaaacctcgctcacc
attcaggacattcgcgtggtggtggatatggggctggcaaggcgcagccggttcgacccc
ggttccggcatgtcgcggctggtcaccgaacgtgtgacccgcgccgaggccacccagcga
cagggccgtgccggccggatggcagcgggggtcggctaccggctgtggaccaagggtgaa
gacggggcgctggccgccttcccaccgccggaaattcaggccgctgacctcacatcactg
gcgctggagctggcgctttggggggcgggtccggatgatctgccgtttctgacgccaccg
ccagagggcgccctcaaggaagcgcaggcgctgctgcggatgctgggcgcactggatggc
gaggggcggatcacctcccatggcaaggtgctggccaaattgcccctgcacccgcgtctg
gggcatatgctggcgcgcttcggtgctgatgcggcaccgctggcggcgctgctggcggaa
cgcgatccgttgcgcggcgcgccggtagatctggcgctgcggctggaggccctgagggac
gcaaaggcgtttcagcgccgccggagctatcagctgaacatccccacgctggaacgcatc
aagggagaggccaagcggctgacccggcaagcgcgcagtggtgcatcctctgcttcggca
agtgctgccgtgatggccgccgccgcctaccccgaccggatcggccagcgccgcaagggc
gatgcgccgcgctatgtgctgtccggtggcaagggcgcggtgctgccgcctgaggacagt
ctggcggcgacgccgtttctggtggggctcgacagtgatggcaacccgcgtgaggcgcgg
ctgcggctggccgcgccgatcaccctgtcagagctgcgcagcgcatttgccgatcagatc
aaaccacagctgacctgtgtctggtccaaacgtgaccgccgggttgtggcgcgtcgccag
cagtgtctgggcgccatcgtgctggaggatcacatctggaaggatgttccggcggacgcc
atcgcaacagcaatgctggagggggtgcgcgaactggggctgcgcctcagcggcgcggct
gcgcggtttgtggcgcgggtacgattgttgcaggccgatggtgaggatctgccggatttc
agcgaagaagctttgctggcgacactggaagattggctgctgccgatgctggacggggtg
cgcagcgccgaggattggaaacgctttgacctgctgcccgcgctgcgcacggcgctcagc
tgggagcagacgcagcggctggaccagatggcgccgccacatttcaccacgccactaggg
cgcaaggtgccgattgattacgcagaggaagtgcctgagatttccgtcaggctgcaggag
atgtttggggtcacccgccatccgaccgtgggtggcgtggcgctgaaggtctccctgctg
tcaccggcgcagcgaccgatccagatcacccgcgatctgcccggtttctggtccggatca
tatgcggatgtgcgcaaggatatgcgggcgcaataccccaaacacccctggcccgaagac
cccacccaggcggatcccacattgcgggcgaagccacgcaaatag
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