Photobacterium gaetbulicola: H744_2c2948
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Entry
H744_2c2948 CDS
T03698
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pgb
Photobacterium gaetbulicola
Pathway
pgb03030
DNA replication
pgb03410
Base excision repair
pgb03420
Nucleotide excision repair
pgb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H744_2c2948
03410 Base excision repair
H744_2c2948
03420 Nucleotide excision repair
H744_2c2948
03430 Mismatch repair
H744_2c2948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgb03032
]
H744_2c2948
03400 DNA repair and recombination proteins [BR:
pgb03400
]
H744_2c2948
Enzymes [BR:
pgb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H744_2c2948
DNA replication proteins [BR:
pgb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H744_2c2948
DNA repair and recombination proteins [BR:
pgb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H744_2c2948
NER (nucleotide excision repair)
GGR (global genome repair) factors
H744_2c2948
MMR (mismatch excision repair)
DNA ligase
H744_2c2948
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H744_2c2948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AJR09599
UniProt:
A0A0C5WX41
LinkDB
All DBs
Position
2:complement(3320724..3322739)
Genome browser
AA seq
671 aa
AA seq
DB search
MSHDIQQQLDELRELLAYHGHRYYVEDNPEIPDVEYDRMMQQLLAIEAENPELVTVDSPS
QRVGGKPLDGFTQITHEIPMLSLDNAFNDDDLHAFEKRMLDRLLSEPSLTYCCEPKLDGL
AVSLMYENGVLTQAATRGDGTTGENITENVRTIRSIPLKLRGEGWPERLEVRGEVFMPKK
GFEALNEKALKKGEKTFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVVEGIELVPSQ
YDRLVQLKGWGLPMCPEIRRLANMGEVIAYHQEIGNKREALPYEIDGVVIKVDDIAIQQR
LGFVARAPRWAIAYKFPAQEELTTLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIARLGVMVGDTVVIRRAGDVIPQIASVVESRRPADAMPIVFPESCPVCESKVERVE
GEAVARCSGGLFCQAQRKEALKHFVSRKALDVDGCGEKIIEQLVDREMVATPADLFKLSA
GVLTVLERMGPKSAQKLVDSLSASKQTTLPRFLYSLGIREVGEATAANLASHFETLPAIE
SASKEKLIEVQDVGEIVAAHVYNFFREEHNLAVINELIEVGIHWPAIVKRDADVELPLDG
KTVVLTGSLSQLTRSEAKAALQNLGAKVTGSVSKKTDLLVAGEAAGSKLVKAQELGIEVW
DEQALVDFMAR
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagccacgacattcagcagcagctcgatgagctgcgcgaactacttgcctatcacggt
caccgctattacgtagaagacaacccggaaataccggatgtggaatacgaccggatgatg
cagcagttgctggcgattgaggcggaaaatccagagctagtgacggttgattcaccgagc
cagcgtgttggtggtaagccgcttgacggctttacccagatcacccatgaaatcccaatg
ttgtcactggacaatgccttcaatgacgatgatcttcacgcgtttgaaaagcgaatgctg
gatcgcctgttgtctgagccttcccttacctactgctgtgagccgaagctagatggcctg
gctgtgagtttgatgtatgagaacggggtactgacacaggctgcgacccgcggtgatggc
accacgggtgaaaacattaccgaaaatgttcgcaccatccgctcgataccattgaagctc
cggggtgagggctggcctgagcggttggaagtccgcggcgaagttttcatgccgaaaaaa
ggctttgaggcgctgaatgaaaaagcactcaaaaaaggagagaagacttttgccaatccg
cgtaacgcggcagcgggcagtctgcgtcagttggactctaagatcaccgcaacccgacct
ttgagtttttatgcctattccgtgggcgtggtcgaaggaatcgagctggtcccaagtcag
tatgaccgcctcgtgcagctcaaaggctggggattgccgatgtgtcctgagatccgccgg
cttgccaatatgggtgaagtgattgcttaccatcaggaaatcggcaacaaacgtgaagcg
ctgccttatgaaattgatggcgtagtgatcaaggttgacgatatcgctattcagcagcgg
ctcggctttgttgcccgggccccgcgttgggctatcgcgtataagttcccggcgcaggaa
gagctgacgacacttaacaacgtcgagttccaagtcggccgcaccggtgccatcaccccg
gtggcaaaactggaacctgtgtttgtcggtggggtgacggtaagtaatgccaccctgcac
aatgccgatgaaattgcccgccttggcgtcatggttggagataccgtggtgatccgccgt
gccggtgatgtgatcccgcagattgcttctgtggttgaatctcgccgtccggctgatgcc
atgccgattgtcttcccggaatcttgcccggtgtgtgaatccaaggttgaacgggtcgag
ggtgaagccgttgcccgttgctccggtggccttttctgtcaggcacagcgcaaagaagcc
ttgaagcactttgtctctcgtaaagcgctggatgtggatggctgtggtgaaaagatcatt
gagcagttggtggatcgcgaaatggtggcaaccccggctgatttgttcaagctttcggcc
ggggtattgacggtactggaacgaatggggccgaagtccgcgcaaaaactggtggattcc
ttgtccgcttccaaacagactacgctgccgcgtttcttgtattcactcggcattcgagag
gtgggtgaggcaacagccgctaatttggcctcgcacttcgaaaccttgccagccattgag
tctgcgagtaaagaaaagctgatagaggtacaggacgtaggtgagatcgttgctgcccat
gtctacaatttcttccgggaagagcacaacctggccgtgatcaacgagcttatcgaggtg
ggtattcactggccagcgattgtaaagcgcgatgctgatgttgaattgcctttagatggc
aagacggtggtcttgaccggtagtttgtctcagcttacgcgctcggaggctaaagctgcc
ctgcaaaaccttggtgccaaagtgacgggcagtgtatcgaagaagactgacttgctggtg
gctggggaagctgctgggtcaaaacttgttaaggctcaagagcttggcattgaggtttgg
gatgagcaggcactggtcgatttcatggctcgttaa
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