Pseudomyrmex gracilis (graceful twig ant): 109856114
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Entry
109856114 CDS
T05003
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pgc04147
]
109856114
00535 Proteoglycans [BR:
pgc00535
]
109856114
00536 Glycosaminoglycan binding proteins [BR:
pgc00536
]
109856114
Exosome [BR:
pgc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109856114
Proteoglycans [BR:
pgc00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109856114
Glycosaminoglycan binding proteins [BR:
pgc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109856114
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
109856114
NCBI-ProteinID:
XP_020286641
LinkDB
All DBs
Position
Unknown
AA seq
1157 aa
AA seq
DB search
MPLRLVLAILVALCAICGRADFFGEKKEVVYDLMQASLFLMTDDNNLYIEDGEDGFPAFG
FRPGSEVKQPYRLYLPQKLPAEFTLAATFKPTSFRTSYLFAVLNPFETVVQLGIRISDGP
GSNQNVSLVYTNSDEHSHSEEVAKFTVPKLTKKWSKIVIKVSINDVTLYFNCHEMARQKV
TRIPQELVFDTASTLYIAQAGPHIQERYDGLLQSLKLYSDHPPDLVKCNTDFDFSADDVG
SGESNLLDGSGDNDLNKIGREDEDKSEEINLPPFITPPPPNPDYKGPKGEKGDKGEKGES
VRGPPGPPGPPGRDEDWLVKIPQGPPGQKGDPGTCTCNATALMSSFTMPTMIQGPKGEPG
VPGQEGKQGSMGLTGAAGPPGERGLQGPSGAKGDKGDIGIPGPEGPQGQKGEPGRDGIPG
EKGAQGPPGPPGKGEFSGYDPSWKPRNIYRTEGITMRPGLPGQKGEPGISGNPGPKGEAG
IPGAKGIKGEPGHKGTKGDHGKDGPRGIQGFKGEPGAPGAPGLPGAPGENGRPAEKGDKG
DTGPEGKSGSPGPPGPPGTSVPGGINVGDLGFGRGDKGDKGDGGARGYKGDKGTKGEKGD
KGDGGPAGIPGINGIQGPQGDKGEPGKDGVSGLSGIPGAKGEKGERGPPGATTVANSGDY
VTIKGEKGAEGKRGRRGRPGPPGPIGPPGKPGTTGEIGLPGWMNVKGRPGNPGIPGSIGP
MGPKGEKGEPGAPSPYSVSVGIKGDKGDNGFPGIPGRDGQRGPSGPPGPPGPPSHGKYIP
VPGPPGPPGPPGPPGLSLIGQKGEPGIGRSHAFGERDYYRQGPRSSLDEIKALRELKQLK
ELKEQLGVTAVTRGPLESTTKIVPGAVTFQNTEAMTKMSSVSPVGTLAYIIDEQALLVRV
NNGWQYIALGSLLPITTPAPPTTAPPPANPPFEASNLINQIPMKADGTGWYPRMLRMAAL
NEPFTGDMHGIRGADYACYRQARRAGLRGTFRAFLSSRVQNVDSIVRLGDRDLPIVNIKG
DVLFNSWREMFNGNGAYFSQNPRIYSFNGKNILTDVAWPEKVAWHGSHKLGDRAMDTYCD
AWHSSSSDRYGLGSPLTGGRLLEQVRYSCDNKFALLCIEITSDVMIRRRRSAENQLEDDA
EMTENDYMDYLEELMQY
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttagattggtactggcgatcctcgtcgcgctatgcgcgatatgcggccgcgcg
gacttcttcggcgagaaaaaagaagtagtctatgatttaatgcaggcgtcactgtttttg
atgacggacgataataatctttacatagaggacggcgaagatggatttccagcatttggt
tttcgacctggctccgaggtgaaacaaccttacagattgtaccttccgcaaaagttgcca
gccgagtttactctggcggccacattcaagccgacttccttcagaacgagctatctcttc
gccgtccttaatcccttcgaaactgttgtccaattgggcattagaatttcggacgggccc
ggttcgaaccagaacgtctcgctggtctacacaaactcggacgagcattcgcactcggaa
gaagtggcaaaatttaccgtaccgaagctcacaaagaaatggtcaaagattgtcattaag
gtttctatcaacgacgtcaccttatatttcaattgccacgagatggctcggcaaaaagtt
accagaatcccgcaggaattagtattcgacactgccagtacgttgtacatagcgcaagcc
ggcccgcacatccaggaacgatacgacggtctactgcaatctttgaagctatattccgac
catccgccggatctggtaaaatgcaatactgattttgacttttcagcagatgatgtcggt
tctggcgaaagcaacttgttggacggttccggcgacaatgatttgaataagattggtcga
gaggacgaagacaaaagcgaggagattaacctaccaccattcatcacacctccacctccg
aatccagattataaaggtccgaaaggtgagaaaggtgacaaaggggaaaagggtgaaagc
gtacgaggtcctccgggtcctccgggaccgccgggtcgcgatgaggattggctggtcaag
ataccgcagggaccacctggtcaaaagggagatcctggtacttgcacatgcaacgccacg
gccttaatgtcttcctttacaatgccaacaatgatacaaggaccgaagggtgagccagga
gtaccaggacaagaaggcaagcagggttcaatgggactcacgggtgcggcaggaccgcca
ggagaaagaggactgcagggtccgtccggagcaaaaggtgacaagggtgatattggaata
ccgggaccggaaggtcctcaaggtcagaagggagagccgggtcgcgatggaattcccggt
gaaaaaggtgcgcaaggtccgccgggaccgcccggaaaaggagaattctctggttatgac
cctagttggaaacctcgaaatatttacaggacggaaggcattacaatgagaccagggctt
ccaggacagaaaggtgaaccaggcatttcaggaaaccctggtccgaaaggtgaggccggg
atacccggtgctaagggtatcaaaggcgaacccggtcataaaggtactaaaggtgaccat
ggcaaggatggtcctagaggaattcaaggctttaaaggtgagcctggcgcgcctggcgca
cccggactacctggtgcacccggtgaaaatggacgaccagcagagaagggagataaaggc
gacacgggacctgaaggcaaatcaggatctccaggaccacctggtccacctggtacaagt
gttcctggtggtataaacgtaggcgatttaggatttggcagaggcgacaaaggcgacaaa
ggcgatggtggagcacgcggatataaaggtgataagggcacgaagggcgagaagggcgat
aagggtgatggcgggccagctggcattcctggaataaacggtattcaaggacctcaagga
gataaaggcgaacccggtaaagacggagtatcgggattatccggtatacctggtgctaag
ggtgaaaaaggtgaaagaggtcctcccggagccaccaccgtcgccaattctggagactat
gtcactataaaaggggagaaaggcgccgaaggaaaacggggcagaaggggacgacctggg
ccgcctggtcctataggtccacccggaaaaccaggaactacgggggaaatcggtctacca
ggatggatgaacgtaaagggtcgtcctgggaatcctggaattccgggaagtatcggacca
atgggacccaagggagaaaagggggaacccggcgcgccgagcccttatagcgtttccgtt
ggtatcaaaggtgacaaaggagacaatggttttcctggaattcctggaagagacggccaa
agaggaccttcagggcctcccggacctccgggtccaccatctcacggaaaatatatccca
gttccaggacctccgggtcctcccggaccgcctggtccacctggattgtctttaatcgga
caaaaaggagaacccggaattggtagaagtcatgctttcggggagagagattattataga
caaggacctagaagtagtctggatgaaataaaagctctgcgtgaactcaaacagctaaaa
gagttaaaagaacaattaggtgtcactgccgttacaaggggacctttagaaagtacaacg
aaaattgtgccaggagctgttacgttccaaaatacagaagccatgacaaagatgtctagc
gttagtccagttggaactctggcgtacataatagacgaacaagctttactagtcagagtt
aataacggatggcaatatatagcacttggatcactcttacctatcacaacaccagcacca
ccaactacggcaccgcctccagcgaatcctcccttcgaagcatccaacttgattaatcag
atacctatgaaagccgacggaacaggctggtatccgcgaatgttaagaatggccgcattg
aatgaaccatttaccggagatatgcatggcatacgaggagcagactacgcttgctatcga
caagcaagacgagcgggcttgagaggtaccttccgcgctttcctcagttctcgagttcaa
aacgtagatagtattgttcgattgggagatcgagatcttcccatagttaacataaaggga
gacgtgctgttcaattcttggagagagatgtttaatggaaatggagcatacttttctcaa
aatcccagaatttatagcttcaacggaaagaacatccttactgatgtcgcatggcccgag
aaagttgcgtggcatggctctcacaaacttggcgatcgagcaatggatacttattgcgat
gcctggcattcgagcagttcagatcgctacggtctaggatcaccattgaccggtggtcgt
ttgttggaacaagtgcgatactcgtgcgacaataaattcgcgctactctgcatcgagatc
acgagcgatgtgatgataagaagacgacgaagcgccgagaatcagctggaagacgatgct
gagatgacggaaaacgattatatggattacttggaagaactcatgcaatactga
DBGET
integrated database retrieval system
