Phaeobacter gallaeciensis DSM 26640: Gal_03711
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Entry
Gal_03711 CDS
T02968
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pgd
Phaeobacter gallaeciensis DSM 26640
Pathway
pgd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gal_03711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgd03019
]
Gal_03711
03016 Transfer RNA biogenesis [BR:
pgd03016
]
Gal_03711
Enzymes [BR:
pgd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Gal_03711
Messenger RNA biogenesis [BR:
pgd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Gal_03711
Transfer RNA biogenesis [BR:
pgd03016
]
Prokaryotic type
tRNA degradation factors
Gal_03711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR_2
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
AHD11421
UniProt:
V9WK43
LinkDB
All DBs
Position
3766468..3768738
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AA seq
756 aa
AA seq
DB search
MTRIPSKAEILDWIAAHPTHTSKRDIAKAFGIKGSDRIDLKRILKELEAEGHLEKRKKTY
RDPERLPPVSVLQIKAPDGDGDLFARPLEWHGEGVEPIVLVMPRASDPALGEGDRILARL
TVVQDADYHYEARLIRRIGTNPRRVIGIFRKRDEGGRIVPIDKSASTEWAVAENATHGAR
DGELVEAEQAGPKSRLGLPRARVVERLGDPSAPKAVSLIAIHQHGIPDHFPDEVIAEADA
AKPMGLKGREDLRDLPLITIDPADARDHDDACYAHADDDPKNPGGHVIWVAIADVAAYVQ
PGSALDREARKRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRACVAVRMQIDADGNKIA
HRFVRGLMRSAASLHYAEVQEAMDGAPTDRTGPFLEPVIKPLYAAYAALVKARAERQPLD
LDLPERKIVLDEKGTVVSVNFRDRLDAHKLIEEFMVLANVAAAETLIKKRTPLLFRVHEE
PAPEKLEALRETARAAGLSLAKGQVLQTRHLNALLNGAAGTDDAELINISTLRSMQQAYY
APENFGHFGLALRNYAHFTSPIRRYADLIVHRALIAAHGWGDDGLDNAEIERLEQTATHI
SETERRSMMAERDTTDRYLAAYLSERVGNEFEGRISGIARFGAFVKLDETGADGLVPVRS
IGREFFHFDAEAGTLMGADTGLIIAIGQRVKVRLAQATPVTGGLELELLSIEDKPMPAGG
GGGRRSPAGRSVKRKSAKAKAKRSKIKRKVERKRRS
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgacccgtattccttccaaggccgagatcctcgactggatcgcagcccatccgacccat
acctccaaacgcgacatcgccaaagctttcggcatcaagggctccgacaggatcgacttg
aagcggatcctcaaagagcttgaggccgaaggtcatctggagaagcgcaagaagacctat
cgcgacccggagcgcctgcctccggtcagcgttctgcagatcaaagcgccggatggcgat
ggcgatctttttgcacggccgctggaatggcacggcgaaggcgtggagccaattgtgctg
gtgatgccgcgtgcatcagaccccgcgctgggcgagggggatcgcatactagctcggctg
accgtggttcaggatgccgattaccattatgaggcgcggctgatccgtcgcattgggacc
aatccgcgtcgggtgatcgggatcttccgcaagcgggacgaaggcgggcgtattgtgccc
atcgacaaatcggcctccacggaatgggccgttgcggaaaacgccacccatggtgcgcgc
gatggtgagctggtggaggcggaacaggccggaccgaaatcgcgccttggcctgccgcgc
gcccgcgtggtggagcggctgggtgatccatccgcgcccaaggcggtatcgctgattgcg
attcatcagcatggtatccctgaccatttcccggatgaggtcatcgccgaggctgatgcc
gccaaaccgatgggtctgaagggacgcgaagatctgcgagatctgccgttgatcaccatc
gaccctgcggatgcgcgcgatcatgacgacgcttgctatgctcatgccgatgacgatccc
aagaacccgggtggccatgtcatctgggtcgcgattgccgatgtcgccgcctatgtgcag
ccggggtcagcgctggaccgcgaggcgcgcaagcgtggcaattcaagctatttcccggat
cgggttgtgcccatgctgccggaccggttgtcgggtgatctttgcagcctgcacgaaggg
gtgccgcgggcctgcgttgcggtgcggatgcaaatcgatgcagatggcaacaagatcgct
catcgctttgtgcgggggttgatgcggtcggcagcatcgctgcactacgctgaggtgcaa
gaggcgatggatggcgcgccaactgatcgcacaggccccttcctggagcctgtgatcaag
ccgctctacgccgcctatgccgcattggtcaaagcccgggcagagcgccagccgctggat
ctggacctgccggaacgcaaaatcgttctggatgagaagggcacagtcgtttcggtgaat
ttccgcgaccggctggacgcgcataagctgattgaagaattcatggtactggccaatgtg
gcagccgcggaaaccctgatcaagaagcgcacgcccttgttgttccgcgtgcatgaggaa
ccggcaccggagaagctggaagcgttgcgtgagaccgctcgcgccgccggtctttcgttg
gcgaaagggcaggtcttgcagacccgccacctgaatgcgctgctgaatggtgccgccggg
accgatgatgcggagctgatcaatatctccaccctgcgatccatgcagcaggcctattat
gcgccggagaacttcggccatttcggtctggctctgcgcaattatgcgcatttcacctca
cccatccgccgctatgccgacctgatcgtacaccgtgccttgattgccgctcatggttgg
ggtgatgacgggttggacaatgccgagatcgaacggctggagcagacggccacccatatc
tcagagaccgaacgccggtctatgatggcagaacgggataccacagatcgctatcttgcc
gcctatctttcggaacgggtcggcaatgagttcgaaggccgtatcagcggtattgcccgg
tttggcgcctttgtgaaactggatgaaaccggggccgatggtctggtgccagtgcgctct
atcgggcgggagtttttccatttcgatgccgaggccgggaccctgatgggtgccgatacc
ggcctgatcatcgcgattggccagcgggtgaaggtgcgtctggcacaggccactccggtg
accggagggctggaactggaattgctgtcgatcgaggataagccgatgccagcgggcggc
ggtggcgggcggcgcagcccggcgggtcgatccgtgaaacgcaaatccgccaaggcgaag
gccaagcgcagtaagatcaagcgtaaggtggagcgcaaacgccgcagctga
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