Paenibacillus graminis: PGRAT_05835
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Entry
PGRAT_05835 CDS
T03325
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pgm
Paenibacillus graminis
Pathway
pgm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PGRAT_05835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgm03400
]
PGRAT_05835
Enzymes [BR:
pgm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PGRAT_05835
DNA repair and recombination proteins [BR:
pgm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PGRAT_05835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIQ67210
UniProt:
A0A089M496
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All DBs
Position
complement(1319251..1320198)
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AA seq
315 aa
AA seq
DB search
MKLQPVVPFEPVLASQLPEGDQWIAQIKWDGVRMLSYCDGNDAELINRRGNRRTLQYPEI
ADPRAYCRAGSVILDGEVIALSGGKPSFHEVMRRDSLKNAAAIKSVSPQVPVLYMIFDIL
YCNGTWLLDQPLSRRQQMLGEMLLPHPHVQNVPSYARPSELFTAAQSGGLEGIVCKDING
TYAPGGKDSRWQKRKIVFDVNAVAGGVTYRDGLVNALLFGLFDSKGQLHYIGHAGAGRMT
AQDWRTITAQAQQLRTGDMPFTAVPQRSKGAVWIKPQLVFKLHYLEWNSSGTLRHPVIQA
QLDHPPLSCRIEQKG
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcagcccgttgttcccttcgagcctgtgctggcatcacagctgccggagggc
gatcagtggattgcccagattaaatgggatggcgtgcgcatgctctcgtactgtgacggg
aatgacgcagaactgattaaccgccgcggcaaccggcgcaccctgcagtatcccgaaatc
gccgaccccagagcctactgccgggccggctcggtcattttggacggggaagtgattgca
ctcagcggcggcaaaccctccttccatgaagtgatgcgccgggacagcctgaagaatgcc
gcggcgatcaagtccgtaagtccgcaggttcctgtgctgtatatgatatttgacatccta
tactgtaatggcacatggcttctggaccagccgctgtccaggcgccagcaaatgttaggc
gaaatgctgctccctcatccccatgttcagaacgtgccaagctacgcccgtccctccgaa
ctgttcaccgctgcgcagagcggcgggctggaagggattgtgtgcaaggatatcaacggc
acttatgcaccgggcggcaaagacagccgctggcagaagcgcaagatcgtttttgatgtt
aatgctgtggccggcggtgtgacttaccgcgatggacttgtaaatgcgctgctcttcggc
ctctttgacagcaaaggccagctgcattatatcggacatgccggagcagggcggatgacg
gcacaggattggcggactataacagcacaggcgcagcagctcagaaccggggatatgcct
tttacggcagtaccgcagcgcagcaagggggctgtctggatcaaaccccagctcgtattc
aagctgcattatctggagtggaacagctctggaaccctgcggcatccggtcatccaggcc
caattggatcatccccctctgtcgtgccggatagagcagaagggctga
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