KEGG   Paenibacillus graminis: PGRAT_14595Help
Entry
PGRAT_14595       CDS       T03325                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pgm  Paenibacillus graminis
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:pgm00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    PGRAT_14595
   03410 Base excision repair
    PGRAT_14595
   03420 Nucleotide excision repair
    PGRAT_14595
   03430 Mismatch repair
    PGRAT_14595
Enzymes [BR:pgm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PGRAT_14595
    6.5.1.6  DNA ligase (ATP or NAD+)
     PGRAT_14595
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PGRAT_14595
DNA replication proteins [BR:pgm03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    PGRAT_14595
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     PGRAT_14595
DNA repair and recombination proteins [BR:pgm03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PGRAT_14595
   NER (nucleotide excision repair)
    Other NER factors
     PGRAT_14595
   MMR (mismatch exicision repair)
    Other MMR factors
     PGRAT_14595
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(3348091..3348954)
Genome map
AA seq 287 aa AA seqDB search
MFISPMLLQTAPGPFSHSDFIYEPKIDGHRLIYSQQDGKVRLYTRHNNDCTRQYPELQLP
FADDVILDGEVACVDPATRVSDFEAVMSRFQARRADKIKQLTTTMPAYFGIFDILMYKGQ
DLTGLPLLRRKEILAGLFLPSGSFGIVPYVDGAGEALFNQIEARGMEGVVGKRKNSIYEV
GRRSHAWQKVINWTYVEVYITGYRKGEFGWLAAVPSGTSGELRPAGIIEFGASPLHKQAF
RGVSGQLVTGEDKEFVHLEPRLRAKVRMRNWTKSGLLRSPVFTEFII
NT seq 864 nt NT seq  +upstreamnt  +downstreamnt
atgtttatatcccctatgctgctacaaacggctcccgggccgtttagccacagtgatttt
atatatgaaccaaagatagacggtcaccgattgatctactcgcaacaggatgggaaggtc
agattgtacacccgccacaataacgactgtacccggcagtaccccgaattgcaactcccc
tttgcagacgatgtgatcctcgacggtgaggttgcctgtgttgatccagcaacccgcgta
tctgatttcgaggctgtcatgagccggttccaagcacgccgggcagacaagataaaacag
ctcacaaccaccatgccggcctatttcggcatctttgatattttgatgtacaaaggtcaa
gatctcactggattgccgctgctacgccgcaaggagatattggcaggattgtttctcccc
tccggcagcttcggtatagtgccgtatgtagacggcgctggtgaggcgttatttaatcag
attgaggcacggggcatggagggtgtcgtgggcaagcgaaagaacagtatctacgaagtc
ggccgaagatctcacgcttggcaaaaggtaattaactggacctatgtagaggtttatatc
acgggatatcgtaagggagaatttgggtggcttgctgcagtcccatccggtacgtccggc
gagttgcgtccagctgggattattgagttcggggcatccccgctccacaagcaagcattt
cggggagtgtccggccagttggtgaccggggaagataaggagtttgtacacctggagcca
cggctgcgggccaaggtgcgaatgaggaactggaccaaatccggtttgctgcggagtcca
gtctttacggagtttatcatttaa

DBGET integrated database retrieval system