Porphyromonas gingivalis ATCC 33277: PGN_0150
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Entry
PGN_0150 CDS
T00714
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pgn
Porphyromonas gingivalis ATCC 33277
Pathway
pgn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGN_0150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgn03019
]
PGN_0150
Enzymes [BR:
pgn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PGN_0150
Messenger RNA biogenesis [BR:
pgn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PGN_0150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_22
HEM4
tRNA-synt_1b
Motif
Other DBs
NCBI-ProteinID:
BAG32669
UniProt:
B2RH24
LinkDB
All DBs
Position
complement(163205..164488)
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AA seq
427 aa
AA seq
DB search
MRFDELNLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPIL
DRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRR
GMAMGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSS
CQTVMFSATMPPKIRKLAASILRDPIEVEIAISRPPESIMQSAYICYEAQKLPILRKLFE
QSAPKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVDVLVA
TDIVARGIDIDNIRVVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQSDFHKI
ETFLGKSVYKLPVDPEFGEVPAYEPAKRRPRRSGRSGDGRSGRSEKDKRQGKTAPNGRKR
GGTRQRR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgcgctttgatgaattgaatttaggagatgaagtattggatggtctcgatgccatgaat
ttcatcgagaccacacctgtgcaggctgcaaccatcccacccattctggagggtcgcgac
gtgatcgcttgtgcccagaccggcaccggcaagacggcagcctatctgctccccatactg
gatcgcctgagtgcaggcgagtttgcctccgatgtggtgaatgctgtgatcatggctccc
actcgcgaactggcacagcagatagatcagcaggtggaagggttttcttacttcatgccg
gtatcggccgtagccatatacgggggtacggacggggtggcatgggagcagcaacgtcgg
gggatggctatgggggcggacatcgtgatagccacaccgggacgtctgatctcgcatctg
aatctcggttcagccgacctctcccacgtctcctacttcgttttggatgaggccgaccgc
atgctggacatgggtttcttcgatgacatcatgcagatatacaagcagctgccgagttcg
tgccagacggttatgttttcggctacgatgcctcccaagatccgcaagctggcagcatcc
attctaagggatccgatagaggtggagatcgccatcagccgtccgcccgagagcatcatg
cagagcgcatacatttgttacgaagcgcaaaagctgccgatactccgcaagctcttcgag
cagtcggcaccgaagcgtaccattattttcgcctcggccaagctcaaagtccgtgagctg
acttccactctccgcaagatgggtttcaatgtggccgatatgcactccgatctggagcag
tcccagcgcgaacaggtgatgcgcgacttcaaaaacggctatgtggatgtactcgtggcc
actgacatcgtagcccgagggatcgacatcgacaacatacgcgtagtcatcaactacgac
attccccacgatcccgaggactatgtacaccgtatcgggcgtactgcccgagggacaaac
ggggagggtctggctatcactttcgtctccgaggaagagcagagcgacttccacaagatc
gagacgtttctgggcaaatcggtctataaattgcctgtcgatccggagtttggtgaagtc
ccggcctacgaaccggcgaaacgtcgccctcgccgttcggggcgaagcggcgatggacgt
tcaggtcgatccgaaaaggacaaaaggcaaggaaaaacagctccgaacgggcgcaagcgc
ggaggcacgagacagaggcgatag
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