Paraburkholderia graminis: CUJ91_33215
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Entry
CUJ91_33215 CDS
T05548
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pgp
Paraburkholderia graminis
Pathway
pgp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CUJ91_33215 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgp03400
]
CUJ91_33215 (ligD)
Enzymes [BR:
pgp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CUJ91_33215 (ligD)
DNA repair and recombination proteins [BR:
pgp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CUJ91_33215 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AXF12828
LinkDB
All DBs
Position
pPHS1_P:350297..352267
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AA seq
656 aa
AA seq
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MGRWGRGRPNTVVVPPQARGETGLPALIQPQLATLVDRPPKGGDWSYEIKFDGYRVMTRI
EGGVATIFTRNGHDWTERLPRLADACSALQVDDAWLDGEAVVLDSSGQPDFNALQNAFDR
RSTAEIVMFVFDILWLNGTDLREQPLRARRALLRDLMAEQSSDVIRFSEDFPQDPVSVVA
SACKMKLEGIIGKRGDAPYRSGRSPDWIKLKCHLRQEFVVGGFTRAKGARSGVHSLLLGV
YEKDGSLRYAGSVRPYFSSRAGSAFLKRAESVLRDSTAFYNPPKPEKERDYLWLDPSVVV
ECSFLEWTPGGEVRHPIFHAVRDDKPASAVSEEPMVAVEYDEPVEADTGSTREVPGPKGG
LKIGTIRITNPQRVLDEVTGHTKKELAEYYAAIAEWALPQLHNRPLALVRAPDGIKGELF
FQKHSERAAIPGIEELPTELHPRHPPLLVANTPEALVGLAQMSVIELHTWNAVAPDLEHP
DRIIFDLDPDPALPWTAMLEAAELLKVVLDEIGLRSFPKTSGGKGFHVVVPLTRRQGWSE
TKAFAHAVAKHMATVVPQRFSAVLGPKNRVGKIFIDYLRNSRGASTVAAFSVRSRSGMGV
SMPVSWDELKDVTRGDEWTMSKALERQRSLTVDPWHGYWQTRQGITAAMRRAVSID
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggggcgctggggccgggggcgtccgaatacggtcgtcgttccaccgcaagcgcgcggt
gagacaggcttgccggcgctgatacagccgcaactggcgacactggtggaccgtccgccg
aagggaggcgactggtcctacgagatcaaattcgacggttatcgcgtaatgacccgcatc
gagggcggcgtcgcgacgatcttcacccgcaacggtcatgactggactgagcggttgccg
cgtctcgcggatgcctgctctgcgctgcaggtcgatgacgcgtggctcgacggcgaggcc
gtcgtgctcgattcaagcggtcagccagacttcaacgcgttgcaaaatgccttcgaccgg
cgcagcacggccgagatcgtcatgttcgtgttcgacattctctggctgaacggaacagac
cttcgcgagcagccgctgcgagcgcgcagagcgctgttgagggacctgatggcggaacaa
tcatccgacgtcatccgattctccgaggactttccgcaggaccccgtgtcggtcgtcgcg
tcggcgtgcaaaatgaagctcgaaggcatcattggcaagcgcggcgacgcgccgtaccgc
tcggggcgctcgccagactggatcaaactcaaatgccaccttcgacaggaatttgtcgtc
ggcggtttcacgcgggcgaagggcgcgcgctctggcgtgcattcgctgctgctcggcgtg
tacgagaaggatggctcgttgcgctacgccggcagcgtcagaccttacttttcgtcgcgc
gctggctccgcttttctgaagagagcggagtccgtactccgcgactccacagccttctac
aacccgccgaagcctgagaaggaacgcgactacctgtggcttgatccctcggtcgtcgtt
gaatgctcgtttttggaatggacgccgggaggcgaggtgcgtcatcccatcttccatgcc
gtacgcgacgacaagcccgcgtccgcggttagcgaagagccgatggtagccgtggagtac
gacgaacccgtcgaagcggacacaggttcgacgcgcgaagtgccgggacctaagggcggc
ctcaaaatcggcactatccgcataacaaatccgcaacgtgtactggacgaagtcactggt
cacacgaaaaaggagctggcggagtattacgccgcgatcgccgagtgggcgttgcctcag
ctgcataaccggccgcttgcgctcgtgagagcaccagacggtatcaagggcgagctgttt
tttcagaaacatagcgagcgggcggccattcctgggattgaggagttgcccactgaactg
catccgcgtcatcctccgttgctcgttgctaacacgcccgaagcgctggtggggctcgcg
cagatgtccgttattgagttgcacacgtggaacgccgtcgcgcccgacctcgagcacccc
gatcgcatcatcttcgatcttgacccggacccggcgctgccgtggaccgcgatgctggaa
gctgccgagcttctgaaggtcgtgcttgacgagatcggcctgcgctcttttccaaagacc
agtggcggcaagggctttcacgtcgttgtgcccctgacgcgccggcagggatggagtgag
accaaggccttcgcgcacgcggttgcgaagcacatggccacggtcgtgccgcaacgattt
tcggcagtgctcgggccgaaaaaccgcgtaggcaagatctttatcgactacctgcgcaac
agtcgcggtgcgagcacggtcgccgccttctccgtgcggtcccggtcaggtatgggcgta
tcaatgccggtctcgtgggacgaattgaaggacgtgacgcgcggcgatgaatggacgatg
agcaaggctctcgagcgtcagcggtcgctcacggttgacccatggcacggctactggcaa
acccggcagggcatcactgccgctatgcggcgggcagtgagcatagattga
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